SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMSG_c12503_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		probable_ATP-dependent_RNA_helicase_DHX34_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006396 P RNA processing
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:2000623 P negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
Transcript
Level		FPKM:2.18 TPM:0.97
ORF EntryO_BomaMSG3239_internal:A_BomaMSG_c12503_g1_i2
Sequence
(Nucleotide)
CTACCCTTGTCAGCAAAACACCAGTTACTGTGTTATTTGTCTCTGCTCGAAACAACTAAG
CCGTACATTGTGAATTCCATGAGGATGCCGGCCGCACAGACCCTGCTGCTATTGGCGCAT
TCCATTGATACCAATATAGGATTCACAAGGATAGTATGTGACTCGTGGCTCCTGTTGGAG
TTTCCTTATCCTGAAACCGGGTTAAATCTGCTGATGAAAGCTGTTAGGCTGAGACGGAGG
TGGAACGATCTTGTGAACCGACGGCTTGCAGACGCGAACCCAGCGAAGACGGTGGAATCG
GAATTGGAGAAACAGAAGCACTCGAAGTTGTCGTACGAGGAAACACAGTACGAGCTGTCC
TGCGATATCAGTTCGTACATGAACAGCGAAGTTTATTATACGATCAAGAGATTATTACCG
GGCGACCTAAAGATACTGTACTACGGTAATGATGAAGCGCATCCAAATATCGACCCTAAT
CCGTTCGAAGAAGGCTTCGAATGTCGTCCTCACGAGAAGAAAGGCGGTGTCTACGTCACC
GATAATATCGTTTATAATTGCGTTGTCGACACAGATTGGAGT
(582 bp)

- SilkBase 1999-2023 -