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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2251 A_BomaMSG_c12416_g1_i1
280bp
hypothetical_protein_KGM_208270_[Danaus_plexippus_plexippus]
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0046872 F metal ion binding
FPKM:2.58 TPM:1.15
2252 A_BomaMSG_c12419_g1_i1
215bp
FPKM:8.97 TPM:4.01
2253 A_BomaMSG_c1241_g1_i1
290bp
FPKM:3.83 TPM:1.71
2254 A_BomaMSG_c12426_g1_i1
204bp
FPKM:1.17 TPM:0.52
2255 A_BomaMSG_c12427_g1_i1
337bp
FPKM:10.78 TPM:4.82
2256 A_BomaMSG_c12429_g1_i1
245bp
FPKM:2.80 TPM:1.25
2257 A_BomaMSG_c1242_g1_i1
312bp
FPKM:2.07 TPM:0.93
2258 A_BomaMSG_c12432_g1_i1
286bp
FPKM:2.46 TPM:1.10
2259 A_BomaMSG_c12433_g1_i1
317bp
RNA-binding_protein_47_isoform_X2_[Bombyx_mori]
FPKM:2.81 TPM:1.26
2260 A_BomaMSG_c12435_g1_i1
217bp
FPKM:5.82 TPM:2.60
2261 A_BomaMSG_c12436_g1_i1
237bp
FPKM:2.28 TPM:1.02
2262 A_BomaMSG_c12438_g1_i1
409bp
FPKM:1.04 TPM:0.46
2263 A_BomaMSG_c12438_g1_i2
346bp
FPKM:0.00 TPM:0.00
2264 A_BomaMSG_c12441_g1_i1
530bp
transcriptional_adapter_2B_isoform_X2_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007412 P axon target recognition
GO:0008270 F zinc ion binding
GO:0016573 P histone acetylation
GO:0035066 P positive regulation of histone acetylation
GO:0035079 P polytene chromosome puffing
GO:0035222 P wing disc pattern formation
GO:0043966 P histone H3 acetylation
GO:0046872 F metal ion binding
GO:2000331 P regulation of terminal button organization
FPKM:2.13 TPM:0.95
2265 A_BomaMSG_c12442_g1_i1
474bp
E3_ubiquitin-protein_ligase_MIB1_[Bombyx_mori]
GO:0001568 P blood vessel development
GO:0001701 P in utero embryonic development
GO:0001756 P somitogenesis
GO:0001841 P neural tube formation
GO:0001947 P heart looping
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006897 P endocytosis
GO:0007219 P Notch signaling pathway
GO:0007507 P heart development
GO:0008270 F zinc ion binding
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031410 C cytoplasmic vesicle
GO:0045665 P negative regulation of neuron differentiation
GO:0045807 P positive regulation of endocytosis
GO:0046872 F metal ion binding
FPKM:1.45 TPM:0.65
2266 A_BomaMSG_c12442_g2_i1
420bp
FPKM:1.25 TPM:0.56
2267 A_BomaMSG_c12443_g1_i1
238bp
facilitated_trehalose_transporter_Tret1-2_homolog_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:0.75 TPM:0.34
2268 A_BomaMSG_c12447_g1_i1
219bp
putative_Copia_protein_[Danaus_plexippus_plexippus]
GO:0005739 C mitochondrion
FPKM:2.83 TPM:1.27
2269 A_BomaMSG_c12449_g1_i1
376bp
LOW_QUALITY_PROTEIN:_symplekin_[Bombyx_mori]
FPKM:1.63 TPM:0.73
2270 A_BomaMSG_c12449_g1_i2
387bp
LOW_QUALITY_PROTEIN:_symplekin_[Bombyx_mori]
FPKM:1.28 TPM:0.57
2271 A_BomaMSG_c1244_g1_i1
244bp
FPKM:4.95 TPM:2.21
2272 A_BomaMSG_c12450_g1_i1
253bp
exonuclease_mut-7_homolog_[Bombyx_mori]
FPKM:3.24 TPM:1.45
2273 A_BomaMSG_c12453_g1_i1
239bp
cytochrome_P450,_partial_[Bombyx_mori]
GO:0004497 F monooxygenase activity
GO:0005506 F iron ion binding
GO:0006718 P juvenile hormone biosynthetic process
GO:0007552 P metamorphosis
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016709 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen
GO:0020037 F heme binding
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.98 TPM:1.33
2274 A_BomaMSG_c12455_g1_i1
247bp
FPKM:10.29 TPM:4.60
2275 A_BomaMSG_c12459_g1_i1
250bp
PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Amyelois_transitella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:5.33 TPM:2.38
2276 A_BomaMSG_c12460_g1_i1
283bp
polyprotein_[Operophtera_brumata]
FPKM:2.02 TPM:0.90
2277 A_BomaMSG_c12461_g1_i1
207bp
leucine-rich_repeat-containing_protein_24_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005615 C extracellular space
GO:0007409 P axonogenesis
GO:0008201 F heparin binding
GO:0070052 F collagen V binding
FPKM:3.36 TPM:1.50
2278 A_BomaMSG_c12462_g1_i1
262bp
uncharacterized_protein_LOC101743192_[Bombyx_mori]
FPKM:7.75 TPM:3.47
2279 A_BomaMSG_c12463_g1_i1
217bp
olfactory_receptor_40_[Bombyx_mori]
FPKM:1.94 TPM:0.87
2280 A_BomaMSG_c12464_g1_i1
248bp
cadherin-23_[Bombyx_mori]
FPKM:2.72 TPM:1.21
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