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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1771 A_BomaMSG_c11943_g1_i1
409bp
mediator_of_RNA_polymerase_II_transcription_subunit_16_[Bombyx_mori]
FPKM:2.08 TPM:0.93
1772 A_BomaMSG_c11944_g1_i1
580bp
ATP-binding_cassette_sub-family_C_member_Sur_isoform_X2_[Bombyx_mori]
FPKM:4.85 TPM:2.17
1773 A_BomaMSG_c11945_g1_i1
596bp
transmembrane_and_TPR_repeat-containing_protein_4_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:1.66 TPM:0.74
1774 A_BomaMSG_c11947_g1_i1
597bp
peroxidasin_[Bombyx_mori]
GO:0004601 F peroxidase activity
GO:0005576 C extracellular region
GO:0006979 P response to oxidative stress
GO:0016491 F oxidoreductase activity
GO:0020037 F heme binding
GO:0042744 P hydrogen peroxide catabolic process
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
GO:0098869 P cellular oxidant detoxification
FPKM:2.86 TPM:1.28
1775 A_BomaMSG_c11948_g1_i1
331bp
protein_jim_lovell_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001709 P cell fate determination
GO:0001964 P startle response
GO:0002121 P inter-male aggressive behavior
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007298 P border follicle cell migration
GO:0007422 P peripheral nervous system development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0008360 P regulation of cell shape
GO:0016476 P regulation of embryonic cell shape
GO:0017053 C transcription repressor complex
GO:0030707 P ovarian follicle cell development
GO:0031208 F POZ domain binding
GO:0031987 P locomotion involved in locomotory behavior
GO:0035001 P dorsal trunk growth, open tracheal system
GO:0035147 P branch fusion, open tracheal system
GO:0035151 P regulation of tube size, open tracheal system
GO:0040003 P chitin-based cuticle development
GO:0042675 P compound eye cone cell differentiation
GO:0042682 P regulation of compound eye cone cell fate specification
GO:0042803 F protein homodimerization activity
GO:0043388 P positive regulation of DNA binding
GO:0045467 P R7 cell development
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046843 P dorsal appendage formation
GO:0046872 F metal ion binding
GO:0048053 P R1/R6 development
GO:0048666 P neuron development
GO:0048750 P compound eye corneal lens morphogenesis
GO:0048813 P dendrite morphogenesis
GO:0048854 P brain morphogenesis
GO:0060446 P branching involved in open tracheal system development
FPKM:5.20 TPM:2.32
1776 A_BomaMSG_c11949_g1_i1
548bp
histone_demethylase_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0008270 F zinc ion binding
GO:0008584 P male gonad development
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0019907 C cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0031490 F chromatin DNA binding
GO:0032922 P circadian regulation of gene expression
GO:0032993 C protein-DNA complex
GO:0034720 P histone H3-K4 demethylation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048511 P rhythmic process
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:1901726 P negative regulation of histone deacetylase activity
FPKM:3.21 TPM:1.44
1777 A_BomaMSG_c1194_g1_i1
379bp
huntingtin_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1778 A_BomaMSG_c1194_g1_i2
580bp
huntingtin_[Bombyx_mori]
FPKM:1.41 TPM:0.63
1779 A_BomaMSG_c11950_g1_i1
424bp
uncharacterized_protein_LOC110384853_[Bombyx_mori]
FPKM:2.45 TPM:1.10
1780 A_BomaMSG_c11951_g1_i1
509bp
putative_fatty_acyl-CoA_reductase_CG5065_[Bombyx_mori]
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0006629 P lipid metabolic process
GO:0008611 P ether lipid biosynthetic process
GO:0010025 P wax biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0016620 F oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0035336 P long-chain fatty-acyl-CoA metabolic process
GO:0050062 F long-chain-fatty-acyl-CoA reductase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0080019 F fatty-acyl-CoA reductase (alcohol-forming) activity
FPKM:2.06 TPM:0.92
1781 A_BomaMSG_c11952_g1_i1
334bp
FPKM:2.92 TPM:1.31
1782 A_BomaMSG_c11953_g1_i1
224bp
FPKM:2.66 TPM:1.19
1783 A_BomaMSG_c11954_g1_i1
454bp
probable_ATP-dependent_RNA_helicase_YTHDC2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005783 C endoplasmic reticulum
GO:0006396 P RNA processing
GO:0008186 F ATP-dependent activity, acting on RNA
GO:0016787 F hydrolase activity
GO:0034612 P response to tumor necrosis factor
GO:0044822 F RNA binding
GO:0044829 P positive regulation by host of viral genome replication
GO:0070063 F RNA polymerase binding
GO:0070555 P response to interleukin-1
GO:1990247 F N6-methyladenosine-containing RNA binding
FPKM:1.99 TPM:0.89
1784 A_BomaMSG_c11955_g1_i1
236bp
FPKM:2.31 TPM:1.03
1785 A_BomaMSG_c11956_g1_i1
370bp
FPKM:432.67 TPM:193.35
1786 A_BomaMSG_c11957_g1_i1
698bp
FPKM:9.59 TPM:4.28
1787 A_BomaMSG_c11957_g1_i2
472bp
FPKM:0.00 TPM:0.00
1788 A_BomaMSG_c11958_g1_i1
902bp
FPKM:5.46 TPM:2.44
1789 A_BomaMSG_c11959_g1_i1
305bp
FPKM:5.20 TPM:2.32
1790 A_BomaMSG_c1195_g1_i1
2099bp
DEAD_box_polypeptide_5_isoform_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0006417 P regulation of translation
GO:0010501 P RNA secondary structure unwinding
GO:0016246 P RNA interference
GO:0016787 F hydrolase activity
GO:0019730 P antimicrobial humoral response
GO:0022008 P neurogenesis
GO:0031047 P gene silencing by RNA
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0050688 P regulation of defense response to virus
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:221.12 TPM:98.81
1791 A_BomaMSG_c11960_g1_i1
363bp
FPKM:1.58 TPM:0.71
1792 A_BomaMSG_c11961_g1_i1
402bp
sorting_nexin-25_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005768 C endosome
GO:0006810 P transport
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0032801 P receptor catabolic process
GO:0034713 F type I transforming growth factor beta receptor binding
GO:0035091 F phosphatidylinositol binding
GO:0060394 P negative regulation of pathway-restricted SMAD protein phosphorylation
FPKM:1.87 TPM:0.83
1793 A_BomaMSG_c11962_g1_i1
610bp
autophagy-related_protein_2_homolog_A_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000407 C phagophore assembly site
GO:0000422 P autophagy of mitochondrion
GO:0003674 F molecular_function
GO:0005811 C lipid droplet
GO:0006914 P autophagy
GO:0016020 C membrane
GO:0019898 C extrinsic component of membrane
GO:0034045 C phagophore assembly site membrane
GO:0044804 P autophagy of nucleus
FPKM:2.93 TPM:1.31
1794 A_BomaMSG_c11963_g1_i1
405bp
Chain_B,_Sp2-sp3_-_A_Complex_Of_Two_Storage_Proteins_From_Bombyx_Mori_Hemolymph
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0045735 F nutrient reservoir activity
FPKM:1.05 TPM:0.47
1795 A_BomaMSG_c11964_g1_i1
1101bp
nuclear_pore_complex_protein_Nup214_isoform_X2_[Bombyx_mori]
FPKM:2.05 TPM:0.92
1796 A_BomaMSG_c11966_g1_i1
1197bp
thioredoxin_[Bombyx_mori]
GO:0000103 P sulfate assimilation
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006457 P protein folding
GO:0015035 F protein-disulfide reductase activity
GO:0015036 F disulfide oxidoreductase activity
GO:0016671 F oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
GO:0034599 P cellular response to oxidative stress
GO:0045454 P cell redox homeostasis
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
FPKM:56.92 TPM:25.44
1797 A_BomaMSG_c11967_g1_i1
318bp
hypothetical_protein_RR46_04165_[Papilio_xuthus]
FPKM:7.99 TPM:3.57
1798 A_BomaMSG_c11968_g1_i1
405bp
dual_specificity_tyrosine-phosphorylation-regulated_kinase_2_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004712 F protein serine/threonine/tyrosine kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
FPKM:3.16 TPM:1.41
1799 A_BomaMSG_c1196_g1_i1
287bp
FPKM:2.51 TPM:1.12
1800 A_BomaMSG_c11970_g1_i1
222bp
FPKM:6.36 TPM:2.84
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