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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1801 A_BomaMSG_c11971_g1_i1
1466bp
serine/threonine-protein_kinase_SMG1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000723 P telomere maintenance
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006950 P response to stress
GO:0006974 P cellular response to DNA damage stimulus
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0018105 P peptidyl-serine phosphorylation
GO:0042162 F telomeric DNA binding
GO:0044822 F RNA binding
GO:0046777 P protein autophosphorylation
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0046872 F metal ion binding
FPKM:4.35 TPM:1.94
1802 A_BomaMSG_c11972_g1_i1
273bp
uncharacterized_protein_LOC110386318_[Bombyx_mori]
FPKM:1.09 TPM:0.49
1803 A_BomaMSG_c11972_g2_i1
219bp
LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC105841478_[Bombyx_mori]
FPKM:1.64 TPM:0.73
1804 A_BomaMSG_c11973_g1_i1
599bp
FPKM:3.45 TPM:1.54
1805 A_BomaMSG_c11974_g1_i1
441bp
FPKM:4.16 TPM:1.86
1806 A_BomaMSG_c11975_g1_i1
945bp
uncharacterized_protein_LOC109861344_[Pseudomyrmex_gracilis]
FPKM:2.96 TPM:1.32
1807 A_BomaMSG_c11976_g1_i1
273bp
FPKM:4.90 TPM:2.19
1808 A_BomaMSG_c11977_g1_i1
726bp
protein_hairless_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0008052 P sensory organ boundary specification
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0008587 P imaginal disc-derived wing margin morphogenesis
GO:0010941 P regulation of cell death
GO:0016360 P sensory organ precursor cell fate determination
GO:0035019 P somatic stem cell population maintenance
GO:0036335 P intestinal stem cell homeostasis
GO:0044719 P regulation of imaginal disc-derived wing size
GO:0045746 P negative regulation of Notch signaling pathway
GO:0046331 P lateral inhibition
GO:0048190 P wing disc dorsal/ventral pattern formation
GO:1903507 P negative regulation of nucleic acid-templated transcription
FPKM:3.86 TPM:1.72
1809 A_BomaMSG_c11978_g1_i1
268bp
FPKM:8.50 TPM:3.80
1810 A_BomaMSG_c11979_g1_i1
625bp
PREDICTED:_PR_domain_zinc_finger_protein_5-like_[Plutella_xylostella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.69 TPM:1.20
1811 A_BomaMSG_c11980_g1_i1
318bp
equilibrative_nucleoside_transporter_3_[Bombyx_mori]
GO:0005337 F nucleoside transmembrane transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0007595 P lactation
GO:0015858 P nucleoside transport
GO:0015862 P uridine transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0016324 C apical plasma membrane
GO:0030431 P sleep
GO:0060079 P excitatory postsynaptic potential
GO:0071333 P cellular response to glucose stimulus
GO:0071456 P cellular response to hypoxia
GO:0098794 C postsynapse
GO:1901642 P nucleoside transmembrane transport
FPKM:0.80 TPM:0.36
1812 A_BomaMSG_c11981_g1_i1
479bp
MICAL-like_protein_1_isoform_X1_[Bombyx_mori]
FPKM:2.86 TPM:1.28
1813 A_BomaMSG_c11981_g2_i1
358bp
MICAL-like_protein_1_isoform_X2_[Bombyx_mori]
FPKM:3.88 TPM:1.73
1814 A_BomaMSG_c11983_g1_i1
272bp
methionine_synthase_reductase_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003958 F NADPH-hemoprotein reductase activity
GO:0005506 F iron ion binding
GO:0005575 C cellular_component
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006306 P DNA methylation
GO:0008150 P biological_process
GO:0008652 P cellular amino acid biosynthetic process
GO:0009086 P methionine biosynthetic process
GO:0010181 F FMN binding
GO:0016491 F oxidoreductase activity
GO:0016723 F oxidoreductase activity, acting on metal ions, NAD or NADP as acceptor
GO:0030586 F [methionine synthase] reductase activity
GO:0043418 P homocysteine catabolic process
GO:0045111 C intermediate filament cytoskeleton
GO:0046655 P folic acid metabolic process
GO:0050444 F obsolete aquacobalamin reductase (NADPH) activity
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070402 F NADPH binding
GO:0071949 F FAD binding
GO:1904042 P negative regulation of cystathionine beta-synthase activity
FPKM:13.17 TPM:5.88
1815 A_BomaMSG_c11984_g1_i1
433bp
FPKM:2.85 TPM:1.27
1816 A_BomaMSG_c11985_g1_i1
269bp
FPKM:0.00 TPM:0.00
1817 A_BomaMSG_c11986_g1_i1
349bp
proton-coupled_amino_acid_transporter-like_protein_pathetic_[Bombyx_mori]
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
FPKM:3.38 TPM:1.51
1818 A_BomaMSG_c11987_g1_i1
608bp
uncharacterized_protein_LOC101746539_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005923 C bicellular tight junction
GO:0030674 F protein-macromolecule adaptor activity
GO:0090162 P establishment of epithelial cell polarity
FPKM:3.23 TPM:1.44
1819 A_BomaMSG_c11988_g1_i1
462bp
PREDICTED:_uncharacterized_protein_LOC105844739_[Hydra_vulgaris]
FPKM:3.31 TPM:1.48
1820 A_BomaMSG_c11988_g1_i2
272bp
PREDICTED:_uncharacterized_protein_LOC105844739_[Hydra_vulgaris]
FPKM:0.91 TPM:0.41
1821 A_BomaMSG_c11990_g1_i1
650bp
segment_polarity_protein_dishevelled_[Bombyx_mori]
GO:0005109 F frizzled binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007275 P multicellular organism development
GO:0008013 F beta-catenin binding
GO:0016055 P Wnt signaling pathway
GO:0030030 P cell projection organization
GO:0032053 P ciliary basal body organization
GO:0035556 P intracellular signal transduction
GO:0042384 P cilium assembly
GO:0060070 P canonical Wnt signaling pathway
GO:0090179 P planar cell polarity pathway involved in neural tube closure
FPKM:2.29 TPM:1.02
1822 A_BomaMSG_c11991_g1_i1
685bp
PREDICTED:_glycosyltransferase-like_protein_LARGE1_isoform_X1_[Amyelois_transitella]
GO:0000139 C Golgi membrane
GO:0003824 F catalytic activity
GO:0005794 C Golgi apparatus
GO:0006486 P protein glycosylation
GO:0008152 P metabolic process
GO:0015020 F glucuronosyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0035269 P protein O-linked mannosylation
GO:0042285 F xylosyltransferase activity
GO:0046872 F metal ion binding
FPKM:3.27 TPM:1.46
1823 A_BomaMSG_c11991_g1_i2
293bp
LARGE_xylosyl-_and_glucuronyltransferase_1_[Bombyx_mori]
FPKM:3.28 TPM:1.46
1824 A_BomaMSG_c11992_g1_i1
505bp
WD_repeat-containing_protein_mio_[Bombyx_mori]
GO:0001674 C female germ cell nucleus
GO:0005634 C nucleus
GO:0005764 C lysosome
GO:0006302 P double-strand break repair
GO:0007275 P multicellular organism development
GO:0007293 P germarium-derived egg chamber formation
GO:0007294 P germarium-derived oocyte fate determination
GO:0009994 P oocyte differentiation
GO:0010507 P negative regulation of autophagy
GO:0030154 P cell differentiation
GO:0030716 P oocyte fate determination
GO:0032008 P positive regulation of TOR signaling
GO:0034198 P cellular response to amino acid starvation
GO:0035859 C Seh1-associated complex
GO:0040020 P regulation of meiotic nuclear division
GO:0043234 C protein-containing complex
GO:0044754 C autolysosome
GO:0045793 P positive regulation of cell size
GO:0048477 P oogenesis
GO:1903432 P regulation of TORC1 signaling
FPKM:2.65 TPM:1.19
1825 A_BomaMSG_c11993_g1_i1
367bp
glucose_dehydrogenase_[FAD,_quinone]-like_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0008812 F choline dehydrogenase activity
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0019285 P glycine betaine biosynthetic process from choline
GO:0042426 P choline catabolic process
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:3.72 TPM:1.66
1826 A_BomaMSG_c11994_g1_i1
412bp
trifunctional_purine_biosynthetic_protein_adenosine-3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0004637 F phosphoribosylamine-glycine ligase activity
GO:0004641 F phosphoribosylformylglycinamidine cyclo-ligase activity
GO:0004644 F phosphoribosylglycinamide formyltransferase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006164 P purine nucleotide biosynthetic process
GO:0006189 P 'de novo' IMP biosynthetic process
GO:0008152 P metabolic process
GO:0009058 P biosynthetic process
GO:0009113 P purine nucleobase biosynthetic process
GO:0016740 F transferase activity
GO:0016742 F hydroxymethyl-, formyl- and related transferase activity
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
FPKM:3.59 TPM:1.61
1827 A_BomaMSG_c11995_g1_i1
212bp
beta-1-syntrophin_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006936 P muscle contraction
GO:0016010 C dystrophin-associated glycoprotein complex
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0030165 F PDZ domain binding
GO:0042383 C sarcolemma
GO:0043234 C protein-containing complex
GO:0045202 C synapse
FPKM:5.20 TPM:2.32
1828 A_BomaMSG_c11996_g1_i1
333bp
FPKM:7.34 TPM:3.28
1829 A_BomaMSG_c11997_g1_i1
444bp
FPKM:8.47 TPM:3.78
1830 A_BomaMSG_c11998_g1_i1
470bp
mariner_transposase,_partial_[Poecilia_reticulata]
FPKM:4.42 TPM:1.97
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