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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMSG_c1195_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		DEAD_box_polypeptide_5_isoform_1_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0006417 P regulation of translation
GO:0010501 P RNA secondary structure unwinding
GO:0016246 P RNA interference
GO:0016787 F hydrolase activity
GO:0019730 P antimicrobial humoral response
GO:0022008 P neurogenesis
GO:0031047 P gene silencing by RNA
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0050688 P regulation of defense response to virus
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:221.12 TPM:98.81
ORF EntryO_BomaMSG269_complete:A_BomaMSG_c1195_g1_i1
Sequence
(Nucleotide)
TTGGTTCTGTTCTTCTCATCCTTTCATTCTTTCATCGCGCAGCAGTGGTCAAGGTGGACC
CTGCGTCAGAAAGAATCCATAGTTTAAATAAACATCTTCAACTAAATCCAAAAAATAATC
ATGTCTGGTAACTGGAATAATAGCCGTGGAAACGGTGGTTCCAAATTTGGAGGAGGCAAC
AAATTCGGCGATAATTCGTCTCGGTTTGGCAACGGTGGCAATAGATTTGGAGGATCTGGA
GGATTTGGTGGGAAAAAAGAATTCTCTGGAGGGCAGAACATGCGACGCCCAGATTGGGAT
TCTGTTTCACTCCAACCTTTCAACAAAAACTTTTATGATCCACATCCTACAGTTCTCAAA
AGATCACCATATGAAGTCGAAGAGTATAGAAATAAACACGAGGTAACTGTAAGTGGCGTT
GAGGTTCATAATCCTATTCAATACTTTGAAGAAGCAAATTTTCCTGATTATGTGCAACAA
GGTGTAAAGACAATGGGTTACAAAGAACCGACGCCCATTCAAGCTCAAGGCTGGCCGATA
GCTATGTCTGGAAAGAATTTAGTTGGCGTAGCCCAAACGGGTTCCGGCAAAACGTTGGCC
TACATCTTGCCAGCCATTGTGCACATAAATAACCAACCGCCTATTCGGAGAGGTGATGGT
CCGATTGCTTTGGTCTTGGCGCCTACCAGAGAGTTAGCACAACAAATTCAGCAAGTTGCT
GCAGATTTTGGACACACATCTTATGTTCGTAACACGTGTGTGTTTGGTGGTGCTCCTAAA
AGAGAGCAAGCCCGGGACTTGGAGAGGGGAGTAGAAATAGTCATTGCTACTCCAGGTAGA
TTAATTGATTTCTTGGAAAAGGGCACAACCAACTTACAGCGGTGCACATATTTAGTTCTT
GATGAGGCTGATCGTATGTTGGATATGGGATTTGAACCACAAATCAGAAAAATCATTGAG
CAAATACGCCCAGACAGACAGACTTTGATGTGGTCAGCTACTTGGCCCAAAGAAGTAAAG
AAACTTGCTGAGGATTACTTGGGAGATTACATTCAGATCAATATAGGATCATTACAACTT
TCCGCAAATCACAACATTCTTCAAATTGTAGATATTTGTCAAGAACATGAAAAAGAAAAT
AAATTAAATGTATTATTGCAAGAAATTGGACAAAGTCAAGAACCTGGTGCGAAAACAATA
ATTTTTGTTGAAACCAAGAGAAAAGCTGAGAACATATCAAGGAACATAAGGAGATATGGC
TGGCCAGCTGTTTGTATGCATGGCGATAAAACTCAACAAGAAAGAGATGAAGTTCTGTAT
CAGTTCAAGGAAGGTCGTGCTAGTATTCTTGTAGCAACTGATGTTGCAGCTCGAGGGCTT
GATGTTGATGGTATCAAATATGTAATAAATTTTGATTATCCAAATTCGTCGGAGGATTAC
ATCCATCGTATTGGGAGAACTGGACGTTCAAAATCAAAAGGAACATCATATGCTTTCTTT
ACCCCTTCAAATTCCCGTCAAGCCAAAGATTTGGTATCTGTTCTACAAGAAGCTAATCAG
ATGATTAGCCCACAACTGCAGTCGATGGCCGACCGTTGCGGTGGTGGTGGCGGCGGGTGG
AACAGGAACAGATTCGGCGGAGGTGGACGAGGTGGTGGCGGCTCTTTTAAACGCGGAAGC
AATTTTGGCAAGAGTAGCCAAAGGGGGGGCAGTGGTTACAAACGATTTGACGACTATTAA
ATAAGATTTTTGTTGGCATTTCTAAGAGGGTGAATCCTCGTAATATAGATAAATGTTATG
ATTTGTAGATCCTGTTTGGATATTACAGTTGTGGCTAGTTTAATTTATTTATTGTAATGT
CCACTAGCGACCAAACATTTTATAGGTAACACTATTTATATTATGTTAAAACTGTGATAT
TTTTTTATTGTGATTCTACCCAAGATTTGCAATAGTGCATTCTTACTCTGAAATTTTCCA
AGTAGAATAAATGTCGTCAAATTCATGTAGAATTTTATTAATATTTAGAGCGTTAAGCCG
TCATTCCACTCTTGTTACATTTCATTGTATAATTACATTGTATGAATAAATAATTTAAG
(2099 bp)

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