SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/42653
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1381 A_BomaMSG_c11471_g1_i1
339bp
protein_vav_isoform_X1_[Bombyx_mori]
FPKM:2.13 TPM:0.95
1382 A_BomaMSG_c11472_g1_i1
280bp
FPKM:5.67 TPM:2.53
1383 A_BomaMSG_c11473_g1_i1
488bp
FPKM:2.19 TPM:0.98
1384 A_BomaMSG_c11475_g1_i1
242bp
lipase-1_[Bombyx_mori]
GO:0004620 F phospholipase activity
GO:0004806 F triglyceride lipase activity
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0006629 P lipid metabolic process
GO:0009395 P phospholipid catabolic process
GO:0016042 P lipid catabolic process
GO:0016787 F hydrolase activity
GO:0019376 P galactolipid catabolic process
GO:0046872 F metal ion binding
GO:0047372 F acylglycerol lipase activity
GO:0047714 F galactolipase activity
GO:0052689 F carboxylic ester hydrolase activity
FPKM:2.16 TPM:0.97
1385 A_BomaMSG_c11476_g1_i1
641bp
PREDICTED:_jmjC_domain-containing_protein_4_isoform_X1_[Papilio_xuthus]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:3.98 TPM:1.78
1386 A_BomaMSG_c11477_g1_i1
688bp
FPKM:4.88 TPM:2.18
1387 A_BomaMSG_c11478_g1_i1
599bp
FPKM:3.15 TPM:1.41
1388 A_BomaMSG_c11479_g1_i1
446bp
FPKM:6.82 TPM:3.05
1389 A_BomaMSG_c1147_g1_i1
216bp
FPKM:8.85 TPM:3.95
1390 A_BomaMSG_c11480_g1_i1
374bp
FPKM:1.80 TPM:0.80
1391 A_BomaMSG_c11481_g1_i1
893bp
DE-cadherin_isoform_X3_[Bombyx_mori]
GO:0000902 P cell morphogenesis
GO:0001738 P morphogenesis of a polarized epithelium
GO:0001745 P compound eye morphogenesis
GO:0001748 P insect visual primordium development
GO:0002009 P morphogenesis of an epithelium
GO:0003151 P outflow tract morphogenesis
GO:0004872 F signaling receptor activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005912 C adherens junction
GO:0005913 C adherens junction
GO:0005914 C spot adherens junction
GO:0005915 C zonula adherens
GO:0005938 C cell cortex
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007163 P establishment or maintenance of cell polarity
GO:0007280 P pole cell migration
GO:0007281 P germ cell development
GO:0007297 P ovarian follicle cell migration
GO:0007298 P border follicle cell migration
GO:0007314 P oocyte anterior/posterior axis specification
GO:0007370 P ventral furrow formation
GO:0007379 P segment specification
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007420 P brain development
GO:0007424 P open tracheal system development
GO:0007435 P salivary gland morphogenesis
GO:0007506 P gonadal mesoderm development
GO:0007507 P heart development
GO:0008013 F beta-catenin binding
GO:0008105 P protein localization
GO:0008258 P head involution
GO:0008354 P germ cell migration
GO:0008356 P asymmetric cell division
GO:0008406 P gonad development
GO:0010004 P gastrulation involving germ band extension
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016318 P ommatidial rotation
GO:0016337 P cell-cell adhesion
GO:0016339 P calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0016342 C catenin complex
GO:0017022 F myosin binding
GO:0030031 P cell projection assembly
GO:0030175 C filopodium
GO:0030708 P germarium-derived female germ-line cyst encapsulation
GO:0030720 P oocyte localization involved in germarium-derived egg chamber formation
GO:0035019 P somatic stem cell population maintenance
GO:0035099 P hemocyte migration
GO:0035147 P branch fusion, open tracheal system
GO:0035160 P maintenance of epithelial integrity, open tracheal system
GO:0035212 P cell competition in a multicellular organism
GO:0035262 P gonad morphogenesis
GO:0036099 P female germ-line stem cell population maintenance
GO:0042060 P wound healing
GO:0042078 P germ-line stem cell division
GO:0042803 F protein homodimerization activity
GO:0043296 C apical junction complex
GO:0044331 P cell-cell adhesion mediated by cadherin
GO:0045176 P apical protein localization
GO:0045186 P zonula adherens assembly
GO:0046872 F metal ion binding
GO:0048103 P somatic stem cell division
GO:0048477 P oogenesis
GO:0050832 P defense response to fungus
GO:0050839 F cell adhesion molecule binding
GO:0055037 C recycling endosome
GO:0071907 P determination of digestive tract left/right asymmetry
GO:0098730 P male germline stem cell symmetric division
FPKM:2.45 TPM:1.09
1392 A_BomaMSG_c11482_g1_i1
597bp
mitochondrial_ubiquitin_ligase_activator_of_nfkb_1-A_[Bombyx_mori]
GO:0000266 P mitochondrial fission
GO:0004842 F ubiquitin-protein transferase activity
GO:0004871 F obsolete signal transducer activity
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005777 C peroxisome
GO:0006919 P activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0007005 P mitochondrion organization
GO:0007165 P signal transduction
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030308 P negative regulation of cell growth
GO:0031307 C integral component of mitochondrial outer membrane
GO:0042802 F identical protein binding
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0046872 F metal ion binding
GO:0051646 P mitochondrion localization
FPKM:2.56 TPM:1.14
1393 A_BomaMSG_c11483_g1_i1
217bp
FPKM:7.76 TPM:3.47
1394 A_BomaMSG_c11485_g1_i1
211bp
uncharacterized_protein_LOC101738488_isoform_X2_[Bombyx_mori]
FPKM:5.28 TPM:2.36
1395 A_BomaMSG_c11486_g1_i1
257bp
FPKM:4.37 TPM:1.95
1396 A_BomaMSG_c11488_g1_i1
361bp
protein_MON2_homolog_[Bombyx_mori]
GO:0005519 F cytoskeletal regulatory protein binding
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0007318 P pole plasm protein localization
GO:0015031 P protein transport
GO:0031532 P actin cytoskeleton reorganization
FPKM:5.10 TPM:2.28
1397 A_BomaMSG_c11489_g1_i1
605bp
box_C/D_snoRNA_protein_1_[Bombyx_mori]
GO:0042254 P ribosome biogenesis
GO:0046872 F metal ion binding
FPKM:4.29 TPM:1.92
1398 A_BomaMSG_c1148_g1_i1
245bp
plexin-B_[Bombyx_mori]
GO:0001763 P morphogenesis of a branching structure
GO:0002116 C semaphorin receptor complex
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007411 P axon guidance
GO:0007414 P axonal defasciculation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017154 F semaphorin receptor activity
GO:0021785 P branchiomotor neuron axon guidance
GO:0030334 P regulation of cell migration
GO:0048841 P regulation of axon extension involved in axon guidance
GO:0071526 P semaphorin-plexin signaling pathway
GO:1902287 P semaphorin-plexin signaling pathway involved in axon guidance
FPKM:2.10 TPM:0.94
1399 A_BomaMSG_c11493_g1_i1
238bp
FPKM:3.51 TPM:1.57
1400 A_BomaMSG_c11493_g1_i2
201bp
FPKM:4.10 TPM:1.83
1401 A_BomaMSG_c11494_g1_i1
404bp
FPKM:5.30 TPM:2.37
1402 A_BomaMSG_c11496_g1_i1
305bp
potassium_voltage-gated_channel_subfamily_H_member_6-like_isoform_X8_[Bombyx_mori]
FPKM:1.30 TPM:0.58
1403 A_BomaMSG_c11498_g1_i1
299bp
FPKM:4.05 TPM:1.81
1404 A_BomaMSG_c11499_g1_i1
659bp
FPKM:3.31 TPM:1.48
1405 A_BomaMSG_c1149_g1_i1
289bp
FPKM:1.93 TPM:0.86
1406 A_BomaMSG_c11501_g1_i1
892bp
CCA_tRNA_nucleotidyltransferase_1,_mitochondrial_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0001680 P tRNA 3'-terminal CCA addition
GO:0003723 F RNA binding
GO:0004810 F tRNA adenylyltransferase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006396 P RNA processing
GO:0006626 P protein targeting to mitochondrion
GO:0008033 P tRNA processing
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0034062 F 5'-3' RNA polymerase activity
GO:0042780 P tRNA 3'-end processing
GO:0052927 F CTP:tRNA cytidylyltransferase activity
GO:0052928 F CTP:3'-cytidine-tRNA cytidylyltransferase activity
GO:0052929 F ATP:3'-cytidine-cytidine-tRNA adenylyltransferase activity
GO:1990180 P mitochondrial tRNA 3'-end processing
FPKM:5.53 TPM:2.47
1407 A_BomaMSG_c11503_g1_i1
228bp
nonfunctional_doublesex_M4_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000398 P mRNA splicing, via spliceosome
GO:0000987 F cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007283 P spermatogenesis
GO:0007417 P central nervous system development
GO:0007483 P genital disc morphogenesis
GO:0007485 P imaginal disc-derived male genitalia development
GO:0007486 P imaginal disc-derived female genitalia development
GO:0007530 P sex determination
GO:0007548 P sex differentiation
GO:0007619 P courtship behavior
GO:0008049 P male courtship behavior
GO:0008270 F zinc ion binding
GO:0016199 P axon midline choice point recognition
GO:0018993 P somatic sex determination
GO:0019101 P female somatic sex determination
GO:0019102 P male somatic sex determination
GO:0030154 P cell differentiation
GO:0035215 P genital disc development
GO:0035263 P genital disc sexually dimorphic development
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0045433 P male courtship behavior, veined wing generated song production
GO:0045496 P male analia development
GO:0045497 P female analia development
GO:0045498 P sex comb development
GO:0045570 P regulation of imaginal disc growth
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046660 P female sex differentiation
GO:0046661 P male sex differentiation
GO:0046872 F metal ion binding
GO:0048071 P sex-specific pigmentation
GO:0048086 P negative regulation of developmental pigmentation
FPKM:6.75 TPM:3.01
1408 A_BomaMSG_c11504_g1_i1
207bp
FPKM:5.60 TPM:2.50
1409 A_BomaMSG_c11505_g1_i1
1326bp
insulin-like_growth_factor_2_mRNA-binding_protein_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006417 P regulation of translation
GO:0006810 P transport
GO:0010494 C cytoplasmic stress granule
GO:0010610 P regulation of mRNA stability involved in response to stress
GO:0010976 P positive regulation of neuron projection development
GO:0017148 P negative regulation of translation
GO:0022013 P pallium cell proliferation in forebrain
GO:0030027 C lamellipodium
GO:0030175 C filopodium
GO:0030426 C growth cone
GO:0030529 C ribonucleoprotein complex
GO:0042995 C cell projection
GO:0044822 F RNA binding
GO:0045182 F translation regulator activity
GO:0048027 F mRNA 5'-UTR binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051028 P mRNA transport
GO:0070934 P CRD-mediated mRNA stabilization
GO:0070937 C CRD-mediated mRNA stability complex
GO:0097150 P neuronal stem cell population maintenance
FPKM:2.69 TPM:1.20
1410 A_BomaMSG_c11506_g1_i1
237bp
glycosyltransferase_isoform_X1_[Bombyx_mori]
FPKM:1.52 TPM:0.68
previous next from show/42653

- SilkBase 1999-2023 -