SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/42653
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1351 A_BomaMSG_c11440_g1_i1
359bp
FPKM:1.93 TPM:0.86
1352 A_BomaMSG_c11441_g1_i1
480bp
FPKM:2.45 TPM:1.09
1353 A_BomaMSG_c11442_g1_i1
486bp
zinc_finger_protein_729_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
FPKM:1.40 TPM:0.63
1354 A_BomaMSG_c11444_g1_i1
412bp
LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101745926_[Bombyx_mori]
FPKM:2.57 TPM:1.15
1355 A_BomaMSG_c11444_g1_i2
201bp
LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101745926_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1356 A_BomaMSG_c11444_g1_i3
277bp
LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101745926_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1357 A_BomaMSG_c11446_g1_i1
248bp
FPKM:6.11 TPM:2.73
1358 A_BomaMSG_c11447_g1_i1
273bp
FPKM:3.27 TPM:1.46
1359 A_BomaMSG_c11449_g1_i1
422bp
RB1-inducible_coiled-coil_protein_1_isoform_X1_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000407 C phagophore assembly site
GO:0001889 P liver development
GO:0001934 P positive regulation of protein phosphorylation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006914 P autophagy
GO:0007049 P cell cycle
GO:0007254 P JNK cascade
GO:0007507 P heart development
GO:0010506 P regulation of autophagy
GO:0016236 P macroautophagy
GO:0019901 F protein kinase binding
GO:0031965 C nuclear membrane
GO:0034045 C phagophore assembly site membrane
GO:0043066 P negative regulation of apoptotic process
GO:0045793 P positive regulation of cell size
GO:1990316 C Atg1/ULK1 kinase complex
GO:2001237 P negative regulation of extrinsic apoptotic signaling pathway
FPKM:2.66 TPM:1.19
1360 A_BomaMSG_c1144_g1_i1
338bp
Exocyst_complex_component_2_[Papilio_machaon]
FPKM:8.93 TPM:3.99
1361 A_BomaMSG_c11450_g1_i1
276bp
FPKM:0.53 TPM:0.24
1362 A_BomaMSG_c11451_g1_i1
287bp
uncharacterized_protein_LOC101739840_[Bombyx_mori]
FPKM:0.98 TPM:0.44
1363 A_BomaMSG_c11452_g1_i1
284bp
glycine-rich_protein_[Bombyx_mori]
FPKM:3.50 TPM:1.56
1364 A_BomaMSG_c11453_g1_i1
217bp
FPKM:3.88 TPM:1.73
1365 A_BomaMSG_c11454_g1_i1
257bp
protein_abrupt_isoform_X2_[Bombyx_mori]
GO:0000785 C chromatin
GO:0000794 C condensed nuclear chromosome
GO:0001672 P regulation of chromatin assembly or disassembly
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005704 C polytene chromosome band
GO:0005730 C nucleolus
GO:0005886 C plasma membrane
GO:0006325 P chromatin organization
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006915 P apoptotic process
GO:0007060 P male meiosis chromosome segregation
GO:0007141 P male meiosis I
GO:0008195 F phosphatidate phosphatase activity
GO:0008354 P germ cell migration
GO:0010032 P meiotic chromosome condensation
GO:0016311 P dephosphorylation
GO:0016568 P chromatin organization
GO:0031208 F POZ domain binding
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
FPKM:1.81 TPM:0.81
1366 A_BomaMSG_c11454_g1_i2
284bp
protein_abrupt_isoform_X2_[Bombyx_mori]
GO:0000785 C chromatin
GO:0000794 C condensed nuclear chromosome
GO:0001672 P regulation of chromatin assembly or disassembly
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005704 C polytene chromosome band
GO:0005730 C nucleolus
GO:0005886 C plasma membrane
GO:0006325 P chromatin organization
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006915 P apoptotic process
GO:0007060 P male meiosis chromosome segregation
GO:0007141 P male meiosis I
GO:0008195 F phosphatidate phosphatase activity
GO:0008354 P germ cell migration
GO:0010032 P meiotic chromosome condensation
GO:0016311 P dephosphorylation
GO:0016568 P chromatin organization
GO:0031208 F POZ domain binding
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
FPKM:1.05 TPM:0.47
1367 A_BomaMSG_c11455_g1_i1
387bp
FPKM:4.82 TPM:2.16
1368 A_BomaMSG_c11456_g1_i1
319bp
uncharacterized_protein_LOC105841762_[Bombyx_mori]
FPKM:3.18 TPM:1.42
1369 A_BomaMSG_c11458_g1_i1
232bp
probable_ubiquitin_carboxyl-terminal_hydrolase_FAF-X_isoform_X3_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006897 P endocytosis
GO:0007275 P multicellular organism development
GO:0007349 P cellularization
GO:0007601 P visual perception
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008354 P germ cell migration
GO:0008583 P mystery cell differentiation
GO:0009950 P dorsal/ventral axis specification
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030154 P cell differentiation
GO:0035192 P nuclear cortical migration
GO:0036459 F thiol-dependent deubiquitinase
GO:0045824 P negative regulation of innate immune response
GO:0045861 P negative regulation of proteolysis
GO:0048477 P oogenesis
GO:0050829 P defense response to Gram-negative bacterium
GO:0050896 P response to stimulus
FPKM:2.41 TPM:1.08
1370 A_BomaMSG_c11459_g1_i1
407bp
FPKM:3.66 TPM:1.64
1371 A_BomaMSG_c11460_g1_i1
555bp
leucine-rich_repeat-containing_protein_40_isoform_X3_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:1.83 TPM:0.82
1372 A_BomaMSG_c11461_g1_i1
336bp
FPKM:2.53 TPM:1.13
1373 A_BomaMSG_c11462_g1_i1
376bp
uncharacterized_protein_LOC110386573_[Bombyx_mori]
FPKM:6.25 TPM:2.79
1374 A_BomaMSG_c11465_g1_i1
220bp
hypothetical_protein_D910_08719,_partial_[Dendroctonus_ponderosae]
FPKM:4.66 TPM:2.08
1375 A_BomaMSG_c11466_g1_i1
287bp
FPKM:9.30 TPM:4.15
1376 A_BomaMSG_c11467_g1_i1
431bp
FPKM:1.20 TPM:0.53
1377 A_BomaMSG_c11468_g1_i1
329bp
claspin-like_[Bombyx_mori]
GO:0000287 F magnesium ion binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0009086 P methionine biosynthetic process
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0019509 P L-methionine salvage from methylthioadenosine
GO:0043874 F acireductone synthase activity
GO:0046872 F metal ion binding
FPKM:2.25 TPM:1.01
1378 A_BomaMSG_c11469_g1_i1
246bp
elongation_factor_1-alpha,_partial_[Rhynchophorus_ferrugineus]
GO:0000166 F nucleotide binding
GO:0003746 F translation elongation factor activity
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006414 P translational elongation
FPKM:9.00 TPM:4.02
1379 A_BomaMSG_c1146_g1_i1
278bp
HEAT_repeat-containing_protein_5B_[Bombyx_mori]
FPKM:8.37 TPM:3.74
1380 A_BomaMSG_c11470_g1_i1
211bp
FPKM:2.11 TPM:0.94
previous next from show/42653

- SilkBase 1999-2023 -