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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1411 A_BomaMSG_c11506_g2_i1
223bp
glycosyltransferase_[Bombyx_mori]
FPKM:3.59 TPM:1.60
1412 A_BomaMSG_c11507_g1_i1
711bp
PREDICTED:_DEP_domain-containing_protein_5-like_[Plutella_xylostella]
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005829 C cytosol
GO:0032007 P negative regulation of TOR signaling
GO:0032403 F protein-containing complex binding
GO:0034198 P cellular response to amino acid starvation
GO:0035556 P intracellular signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0048471 C perinuclear region of cytoplasm
GO:1990130 C GATOR1 complex
FPKM:5.55 TPM:2.48
1413 A_BomaMSG_c11509_g1_i1
905bp
nucleosome-remodeling_factor_subunit_NURF301_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006325 P chromatin organization
GO:0006334 P nucleosome assembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0010468 P regulation of gene expression
GO:0016568 P chromatin organization
GO:0016589 C NURF complex
GO:0016922 F nuclear receptor binding
GO:0019233 P sensory perception of pain
GO:0030097 P hemopoiesis
GO:0035064 F methylated histone binding
GO:0035073 P pupariation
GO:0035076 P ecdysone receptor-mediated signaling pathway
GO:0042766 P nucleosome mobilization
GO:0045747 P positive regulation of Notch signaling pathway
GO:0045824 P negative regulation of innate immune response
GO:0046331 P lateral inhibition
GO:0046426 P negative regulation of receptor signaling pathway via JAK-STAT
GO:0046872 F metal ion binding
GO:0048515 P spermatid differentiation
GO:0048813 P dendrite morphogenesis
GO:0070577 F lysine-acetylated histone binding
GO:0070615 F ATP-dependent chromatin remodeler activity
FPKM:2.68 TPM:1.20
1414 A_BomaMSG_c1150_g1_i1
263bp
uncharacterized_protein_LOC101744111_[Bombyx_mori]
FPKM:5.32 TPM:2.38
1415 A_BomaMSG_c11510_g1_i1
457bp
LOW_QUALITY_PROTEIN:_supporter_of_activation_of_yellow_protein_[Bombyx_mori]
FPKM:1.31 TPM:0.59
1416 A_BomaMSG_c11512_g1_i1
639bp
uncharacterized_protein_LOC101743204_[Bombyx_mori]
FPKM:1.93 TPM:0.86
1417 A_BomaMSG_c11513_g1_i1
437bp
hypothetical_protein_RR46_00591_[Papilio_xuthus]
FPKM:0.85 TPM:0.38
1418 A_BomaMSG_c11513_g1_i2
354bp
hypothetical_protein_RR46_00591_[Papilio_xuthus]
FPKM:0.45 TPM:0.20
1419 A_BomaMSG_c11514_g1_i1
382bp
FPKM:2.61 TPM:1.17
1420 A_BomaMSG_c11516_g1_i1
402bp
helicase_domino-like_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0004386 F helicase activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005794 C Golgi apparatus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016032 P viral process
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0016787 F hydrolase activity
GO:0043234 C protein-containing complex
GO:0048471 C perinuclear region of cytoplasm
FPKM:4.27 TPM:1.91
1421 A_BomaMSG_c11517_g1_i1
327bp
serine/threonine-protein_phosphatase_2A_regulatory_subunit_B''_subunit_delta_isoform_X2_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1422 A_BomaMSG_c11517_g1_i2
574bp
serine/threonine-protein_phosphatase_2A_regulatory_subunit_B''_subunit_delta_isoform_X2_[Bombyx_mori]
FPKM:1.75 TPM:0.78
1423 A_BomaMSG_c11519_g1_i1
222bp
FPKM:6.36 TPM:2.84
1424 A_BomaMSG_c1151_g1_i1
351bp
atypical_kinase_COQ8B,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0004674 F protein serine/threonine kinase activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0031966 C mitochondrial membrane
GO:0032836 P glomerular basement membrane development
GO:0072015 P glomerular visceral epithelial cell development
FPKM:2.34 TPM:1.05
1425 A_BomaMSG_c11520_g1_i1
222bp
FPKM:1.82 TPM:0.81
1426 A_BomaMSG_c11521_g1_i1
283bp
leucine-rich_repeats_and_immunoglobulin-like_domains_protein_3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007605 P sensory perception of sound
GO:0010640 P regulation of platelet-derived growth factor receptor signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0060384 P innervation
FPKM:4.03 TPM:1.80
1427 A_BomaMSG_c11522_g1_i1
403bp
FPKM:3.99 TPM:1.78
1428 A_BomaMSG_c11523_g1_i1
302bp
FPKM:2.21 TPM:0.99
1429 A_BomaMSG_c11524_g1_i1
357bp
cyclin_dependent_kinase_12_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004693 F cyclin-dependent protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0006468 P protein phosphorylation
GO:0006909 P phagocytosis
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019908 C nuclear cyclin-dependent protein kinase holoenzyme complex
GO:0022008 P neurogenesis
GO:0030332 F cyclin binding
GO:0040018 P positive regulation of multicellular organism growth
GO:0046579 P positive regulation of Ras protein signal transduction
GO:0051726 P regulation of cell cycle
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
GO:0070816 P phosphorylation of RNA polymerase II C-terminal domain
GO:0090277 P positive regulation of peptide hormone secretion
FPKM:3.90 TPM:1.74
1430 A_BomaMSG_c11525_g1_i1
396bp
dedicator_of_cytokinesis_protein_7_[Bombyx_mori]
GO:0000226 P microtubule cytoskeleton organization
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005622 C intracellular anatomical structure
GO:0005925 C focal adhesion
GO:0007264 P small GTPase mediated signal transduction
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0008180 C COP9 signalosome
GO:0022027 P interkinetic nuclear migration
GO:0030154 P cell differentiation
GO:0030424 C axon
GO:0030426 C growth cone
GO:0031175 P neuron projection development
GO:0033138 P positive regulation of peptidyl-serine phosphorylation
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0045178 C basal part of cell
GO:0045200 P establishment of neuroblast polarity
GO:0048365 F small GTPase binding
GO:0050767 P regulation of neurogenesis
GO:0090630 P activation of GTPase activity
GO:1904754 P positive regulation of vascular associated smooth muscle cell migration
FPKM:3.55 TPM:1.59
1431 A_BomaMSG_c11526_g1_i1
368bp
multidrug_resistance-associated_protein_1_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006855 P xenobiotic transmembrane transport
GO:0006979 P response to oxidative stress
GO:0008152 P metabolic process
GO:0008514 F organic anion transmembrane transporter activity
GO:0009408 P response to heat
GO:0009986 C cell surface
GO:0015127 F bilirubin transmembrane transporter activity
GO:0015723 P bilirubin transport
GO:0015732 P prostaglandin transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0016887 F ATP hydrolysis activity
GO:0019904 F protein domain specific binding
GO:0030644 P cellular chloride ion homeostasis
GO:0031427 P response to methotrexate
GO:0042493 P response to xenobiotic stimulus
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0043225 F ATPase-coupled inorganic anion transmembrane transporter activity
GO:0043627 P response to estrogen
GO:0046581 C intercellular canaliculus
GO:0046685 P response to arsenic-containing substance
GO:0048545 P response to steroid hormone
GO:0055085 P transmembrane transport
GO:0070327 P thyroid hormone transport
GO:0098656 P anion transmembrane transport
FPKM:2.47 TPM:1.10
1432 A_BomaMSG_c11526_g2_i1
782bp
multidrug_resistance-associated_protein_1_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:2.45 TPM:1.09
1433 A_BomaMSG_c11527_g1_i1
239bp
FPKM:12.66 TPM:5.66
1434 A_BomaMSG_c11528_g1_i1
302bp
alsin_[Bombyx_mori]
GO:0001662 P behavioral fear response
GO:0001726 C ruffle
GO:0001881 P receptor recycling
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005769 C early endosome
GO:0005813 C centrosome
GO:0005829 C cytosol
GO:0006979 P response to oxidative stress
GO:0007528 P neuromuscular junction development
GO:0007626 P locomotory behavior
GO:0008104 P protein localization
GO:0014069 C postsynaptic density
GO:0016050 P vesicle organization
GO:0016197 P endosomal transport
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0017137 F small GTPase binding
GO:0030027 C lamellipodium
GO:0030425 C dendrite
GO:0030676 F guanyl-nucleotide exchange factor activity
GO:0031982 C vesicle
GO:0035023 P regulation of Rho protein signal transduction
GO:0035249 P synaptic transmission, glutamatergic
GO:0042803 F protein homodimerization activity
GO:0043087 P regulation of GTPase activity
GO:0043197 C dendritic spine
GO:0043234 C protein-containing complex
GO:0043539 F protein serine/threonine kinase activator activity
GO:0043547 P positive regulation of GTPase activity
GO:0045860 P positive regulation of protein kinase activity
GO:0048812 P neuron projection morphogenesis
GO:0051036 P regulation of endosome size
GO:0071902 P positive regulation of protein serine/threonine kinase activity
FPKM:5.30 TPM:2.37
1435 A_BomaMSG_c1152_g1_i1
248bp
probable_cytochrome_P450_313a2_[Bombyx_mori]
GO:0004497 F monooxygenase activity
GO:0005506 F iron ion binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0009055 F electron transfer activity
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 F heme binding
GO:0031090 C organelle membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:4.07 TPM:1.82
1436 A_BomaMSG_c11530_g1_i1
547bp
FPKM:3.39 TPM:1.52
1437 A_BomaMSG_c11531_g1_i1
247bp
FPKM:4.80 TPM:2.15
1438 A_BomaMSG_c11532_g1_i1
685bp
helicase_ARIP4-like_[Bombyx_mori]
FPKM:2.64 TPM:1.18
1439 A_BomaMSG_c11533_g1_i1
371bp
FPKM:5.78 TPM:2.58
1440 A_BomaMSG_c11534_g1_i1
202bp
peptidylprolyl_isomerase_domain_and_WD_repeat-containing_protein_1_isoform_X2_[Bombyx_mori]
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0006457 P protein folding
GO:0008380 P RNA splicing
GO:0016853 F isomerase activity
GO:0071013 C catalytic step 2 spliceosome
FPKM:3.99 TPM:1.79
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