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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
691 O_BomoIG100622_complete:A_BomoIG_DN31541_c1_g3_i13
130bp
692 O_BomoIG100623_complete:A_BomoIG_DN31541_c1_g3_i14
368bp
 CUGBP_Elav-like_family_member_3_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
693 O_BomoIG100624_complete:A_BomoIG_DN31541_c1_g3_i14
160bp
 CUGBP_Elav-like_family_member_4_isoform_X6_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
694 O_BomoIG100625_complete:A_BomoIG_DN31541_c1_g3_i14
134bp
695 O_BomoIG100626_complete:A_BomoIG_DN31541_c1_g3_i15
350bp
 CUGBP_Elav-like_family_member_4_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
696 O_BomoIG100627_complete:A_BomoIG_DN31541_c1_g3_i15
118bp
697 O_BomoIG100628_complete:A_BomoIG_DN31541_c1_g3_i16
125bp
 PREDICTED:_CUGBP_Elav-like_family_member_4_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
698 O_BomoIG100629_complete:A_BomoIG_DN31541_c1_g3_i18
445bp
 CUGBP_Elav-like_family_member_4_isoform_X5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
699 O_BomoIG10062_complete:A_BomoIG_DN33756_c1_g1_i2
100bp
700 O_BomoIG100630_complete:A_BomoIG_DN31541_c1_g3_i18
122bp
701 O_BomoIG100631_5prime_partial:A_BomoIG_DN31541_c1_g3_i19
451bp
 CUGBP_Elav-like_family_member_3_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
702 O_BomoIG100632_complete:A_BomoIG_DN31541_c1_g3_i19
132bp
703 O_BomoIG100633_complete:A_BomoIG_DN31541_c1_g3_i20
242bp
 CUGBP_Elav-like_family_member_4_isoform_X6_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
704 O_BomoIG100634_complete:A_BomoIG_DN31541_c1_g3_i21
409bp
 CUGBP_Elav-like_family_member_3_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
705 O_BomoIG100635_complete:A_BomoIG_DN31541_c1_g3_i21
118bp
706 O_BomoIG100636_complete:A_BomoIG_DN31541_c1_g3_i22
427bp
 CUGBP_Elav-like_family_member_4_isoform_X7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0007283 P spermatogenesis
GO:0008380 P RNA splicing
GO:0030317 P flagellated sperm motility
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
707 O_BomoIG100637_complete:A_BomoIG_DN31541_c1_g3_i22
115bp
708 O_BomoIG100638_complete:A_BomoIG_DN31541_c1_g3_i23
368bp
 CUGBP_Elav-like_family_member_3_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
709 O_BomoIG100639_complete:A_BomoIG_DN31541_c1_g3_i23
144bp
710 O_BomoIG10063_3prime_partial:A_BomoIG_DN33756_c1_g1_i3
248bp
 scaffold_attachment_factor_B2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005886 C plasma membrane
GO:0008201 F heparin binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016337 P cell-cell adhesion
711 O_BomoIG100640_3prime_partial:A_BomoIG_DN31541_c1_g1_i6
107bp
712 O_BomoIG100641_5prime_partial:A_BomoIG_DN31541_c1_g1_i6
106bp
 homeobox_protein_homothorax_isoform_X3_[Helicoverpa_armigera]
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0001654 P eye development
GO:0001752 P compound eye photoreceptor fate commitment
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007380 P specification of segmental identity, head
GO:0007383 P specification of segmental identity, antennal segment
GO:0007420 P brain development
GO:0007422 P peripheral nervous system development
GO:0007432 P salivary gland boundary specification
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007479 P leg disc proximal/distal pattern formation
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0007525 P somatic muscle development
GO:0008134 F transcription factor binding
GO:0009954 P proximal/distal pattern formation
GO:0010092 P specification of animal organ identity
GO:0034504 P protein localization to nucleus
GO:0035282 P segmentation
GO:0035326 F cis-regulatory region sequence-specific DNA binding
GO:0042659 P regulation of cell fate specification
GO:0045664 P regulation of neuron differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048735 P haltere morphogenesis
GO:0048749 P compound eye development
GO:0060323 P head morphogenesis
GO:0090098 P positive regulation of BMP signaling pathway
713 O_BomoIG100642_internal:A_BomoIG_DN31541_c1_g1_i8
257bp
 homeobox_protein_homothorax_isoform_X1_[Helicoverpa_armigera]
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0001654 P eye development
GO:0001752 P compound eye photoreceptor fate commitment
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007380 P specification of segmental identity, head
GO:0007383 P specification of segmental identity, antennal segment
GO:0007420 P brain development
GO:0007422 P peripheral nervous system development
GO:0007432 P salivary gland boundary specification
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007479 P leg disc proximal/distal pattern formation
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0007525 P somatic muscle development
GO:0008134 F transcription factor binding
GO:0009954 P proximal/distal pattern formation
GO:0010092 P specification of animal organ identity
GO:0034504 P protein localization to nucleus
GO:0035282 P segmentation
GO:0035326 F cis-regulatory region sequence-specific DNA binding
GO:0042659 P regulation of cell fate specification
GO:0045664 P regulation of neuron differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048735 P haltere morphogenesis
GO:0048749 P compound eye development
GO:0060323 P head morphogenesis
GO:0090098 P positive regulation of BMP signaling pathway
714 O_BomoIG100643_complete:A_BomoIG_DN31541_c1_g1_i8
126bp
715 O_BomoIG100644_complete:A_BomoIG_DN31541_c1_g1_i8
122bp
716 O_BomoIG100645_complete:A_BomoIG_DN31541_c1_g1_i8
105bp
717 O_BomoIG100646_complete:A_BomoIG_DN31541_c1_g3_i24
368bp
 CUGBP_Elav-like_family_member_3_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
718 O_BomoIG100647_complete:A_BomoIG_DN31541_c1_g3_i24
127bp
719 O_BomoIG100648_complete:A_BomoIG_DN31541_c1_g3_i26
243bp
 CUGBP_Elav-like_family_member_4_isoform_X6_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
720 O_BomoIG100649_complete:A_BomoIG_DN31541_c1_g3_i26
130bp
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