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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
661 O_BomoIG100596_5prime_partial:A_BomoIG_DN31541_c1_g1_i2
350bp
 homeobox_protein_homothorax-like_[Bombyx_mori]
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0001654 P eye development
GO:0001752 P compound eye photoreceptor fate commitment
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007380 P specification of segmental identity, head
GO:0007383 P specification of segmental identity, antennal segment
GO:0007420 P brain development
GO:0007422 P peripheral nervous system development
GO:0007432 P salivary gland boundary specification
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007479 P leg disc proximal/distal pattern formation
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0007525 P somatic muscle development
GO:0008134 F transcription factor binding
GO:0009954 P proximal/distal pattern formation
GO:0010092 P specification of animal organ identity
GO:0034504 P protein localization to nucleus
GO:0035282 P segmentation
GO:0035326 F cis-regulatory region sequence-specific DNA binding
GO:0042659 P regulation of cell fate specification
GO:0045664 P regulation of neuron differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048735 P haltere morphogenesis
GO:0048749 P compound eye development
GO:0060323 P head morphogenesis
GO:0090098 P positive regulation of BMP signaling pathway
662 O_BomoIG100597_complete:A_BomoIG_DN31541_c1_g1_i2
160bp
663 O_BomoIG100598_complete:A_BomoIG_DN31541_c1_g1_i2
122bp
664 O_BomoIG100599_complete:A_BomoIG_DN31541_c1_g1_i2
105bp
665 O_BomoIG10059_complete:A_BomoIG_DN33756_c1_g1_i1
120bp
666 O_BomoIG1005_complete:A_BomoIG_DN30229_c1_g1_i4
137bp
 Golgi-specific_brefeldin_A-resistance_guanine_nucleotide_exchange_factor_1,_partial_[Bombyx_mori]
667 O_BomoIG100600_5prime_partial:A_BomoIG_DN31541_c1_g1_i3
177bp
 homeobox_protein_homothorax-like_[Bombyx_mori]
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0001654 P eye development
GO:0001752 P compound eye photoreceptor fate commitment
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007380 P specification of segmental identity, head
GO:0007383 P specification of segmental identity, antennal segment
GO:0007420 P brain development
GO:0007422 P peripheral nervous system development
GO:0007432 P salivary gland boundary specification
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007479 P leg disc proximal/distal pattern formation
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0007525 P somatic muscle development
GO:0008134 F transcription factor binding
GO:0009954 P proximal/distal pattern formation
GO:0010092 P specification of animal organ identity
GO:0034504 P protein localization to nucleus
GO:0035282 P segmentation
GO:0035326 F cis-regulatory region sequence-specific DNA binding
GO:0042659 P regulation of cell fate specification
GO:0045664 P regulation of neuron differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048735 P haltere morphogenesis
GO:0048749 P compound eye development
GO:0060323 P head morphogenesis
GO:0090098 P positive regulation of BMP signaling pathway
668 O_BomoIG100601_3prime_partial:A_BomoIG_DN31541_c1_g1_i3
140bp
669 O_BomoIG100602_complete:A_BomoIG_DN31541_c1_g3_i1
368bp
 CUGBP_Elav-like_family_member_4_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
670 O_BomoIG100603_complete:A_BomoIG_DN31541_c1_g3_i1
115bp
671 O_BomoIG100604_complete:A_BomoIG_DN31541_c1_g3_i2
526bp
 CUGBP_Elav-like_family_member_3_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
672 O_BomoIG100605_complete:A_BomoIG_DN31541_c1_g3_i2
122bp
673 O_BomoIG100606_5prime_partial:A_BomoIG_DN31541_c1_g3_i3
392bp
 CUGBP_Elav-like_family_member_4_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
674 O_BomoIG100607_complete:A_BomoIG_DN31541_c1_g3_i3
132bp
675 O_BomoIG100608_complete:A_BomoIG_DN31541_c1_g3_i4
320bp
 CUGBP_Elav-like_family_member_4_isoform_X5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0007283 P spermatogenesis
GO:0008380 P RNA splicing
GO:0030317 P flagellated sperm motility
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
676 O_BomoIG100609_complete:A_BomoIG_DN31541_c1_g3_i4
122bp
677 O_BomoIG10060_complete:A_BomoIG_DN33756_c1_g1_i1
100bp
678 O_BomoIG100610_complete:A_BomoIG_DN31541_c1_g3_i5
302bp
 CUGBP_Elav-like_family_member_4_isoform_X7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0007283 P spermatogenesis
GO:0008380 P RNA splicing
GO:0030317 P flagellated sperm motility
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
679 O_BomoIG100611_complete:A_BomoIG_DN31541_c1_g3_i5
115bp
680 O_BomoIG100612_complete:A_BomoIG_DN31541_c1_g3_i7
309bp
 CUGBP_Elav-like_family_member_4_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
681 O_BomoIG100613_complete:A_BomoIG_DN31541_c1_g3_i7
130bp
682 O_BomoIG100614_5prime_partial:A_BomoIG_DN31541_c1_g1_i4
177bp
 homeobox_protein_homothorax-like_[Bombyx_mori]
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0001654 P eye development
GO:0001752 P compound eye photoreceptor fate commitment
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007380 P specification of segmental identity, head
GO:0007383 P specification of segmental identity, antennal segment
GO:0007420 P brain development
GO:0007422 P peripheral nervous system development
GO:0007432 P salivary gland boundary specification
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007479 P leg disc proximal/distal pattern formation
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0007525 P somatic muscle development
GO:0008134 F transcription factor binding
GO:0009954 P proximal/distal pattern formation
GO:0010092 P specification of animal organ identity
GO:0034504 P protein localization to nucleus
GO:0035282 P segmentation
GO:0035326 F cis-regulatory region sequence-specific DNA binding
GO:0042659 P regulation of cell fate specification
GO:0045664 P regulation of neuron differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048735 P haltere morphogenesis
GO:0048749 P compound eye development
GO:0060323 P head morphogenesis
GO:0090098 P positive regulation of BMP signaling pathway
683 O_BomoIG100615_3prime_partial:A_BomoIG_DN31541_c1_g1_i4
140bp
684 O_BomoIG100616_complete:A_BomoIG_DN31541_c1_g3_i8
143bp
 CUGBP_Elav-like_family_member_4_isoform_X6_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
685 O_BomoIG100617_complete:A_BomoIG_DN31541_c1_g3_i10
467bp
 CUGBP_Elav-like_family_member_4_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
686 O_BomoIG100618_complete:A_BomoIG_DN31541_c1_g3_i10
122bp
687 O_BomoIG100619_complete:A_BomoIG_DN31541_c1_g3_i11
161bp
 CUGBP_Elav-like_family_member_4_isoform_X5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
688 O_BomoIG10061_5prime_partial:A_BomoIG_DN33756_c1_g1_i2
278bp
 scaffold_attachment_factor_B2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0042802 F identical protein binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0060008 P Sertoli cell differentiation
GO:0060765 P regulation of androgen receptor signaling pathway
GO:0070062 C extracellular exosome
689 O_BomoIG100620_complete:A_BomoIG_DN31541_c1_g4_i2
121bp
690 O_BomoIG100621_complete:A_BomoIG_DN31541_c1_g3_i13
368bp
 CUGBP_Elav-like_family_member_3_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
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