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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5251 O_BomoIG10964_3prime_partial:A_BomoIG_DN31334_c5_g6_i3
158bp
5252 O_BomoIG10965_5prime_partial:A_BomoIG_DN31334_c5_g6_i3
156bp
5253 O_BomoIG10966_internal:A_BomoIG_DN31334_c5_g6_i4
187bp
 WSCD_family_member_AAEL009094_isoform_X1_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
5254 O_BomoIG10967_3prime_partial:A_BomoIG_DN31334_c5_g6_i4
158bp
5255 O_BomoIG10968_5prime_partial:A_BomoIG_DN31334_c5_g6_i4
156bp
5256 O_BomoIG10969_5prime_partial:A_BomoIG_DN31334_c5_g6_i5
171bp
5257 O_BomoIG1096_3prime_partial:A_BomoIG_DN30255_c2_g1_i4
196bp
 kinesin-like_protein_Klp68D_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0007018 P microtubule-based movement
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
5258 O_BomoIG10970_3prime_partial:A_BomoIG_DN31334_c5_g6_i5
157bp
5259 O_BomoIG10971_3prime_partial:A_BomoIG_DN31334_c5_g6_i6
137bp
 WSCD_family_member_AAEL009094_isoform_X1_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
5260 O_BomoIG10972_5prime_partial:A_BomoIG_DN31334_c5_g6_i6
134bp
5261 O_BomoIG10973_3prime_partial:A_BomoIG_DN31334_c5_g6_i7
177bp
 WSCD_family_member_AAEL009094_isoform_X1_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
5262 O_BomoIG10974_3prime_partial:A_BomoIG_DN31334_c5_g6_i7
158bp
5263 O_BomoIG10975_5prime_partial:A_BomoIG_DN31334_c5_g6_i7
156bp
5264 O_BomoIG10976_complete:A_BomoIG_DN31381_c3_g1_i1
489bp
 PREDICTED:_FACT_complex_subunit_Ssrp1_[Amyelois_transitella]
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
5265 O_BomoIG10977_complete:A_BomoIG_DN31381_c3_g1_i1
158bp
5266 O_BomoIG10978_complete:A_BomoIG_DN31381_c3_g3_i1
112bp
5267 O_BomoIG10979_5prime_partial:A_BomoIG_DN31381_c3_g5_i1
786bp
 RNA_polymerase-associated_protein_Rtf1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007219 P Notch signaling pathway
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0035327 C euchromatin
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0045747 P positive regulation of Notch signaling pathway
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0051568 P histone H3-K4 methylation
GO:0051571 P positive regulation of histone H3-K4 methylation
5268 O_BomoIG1097_complete:A_BomoIG_DN30255_c2_g1_i4
145bp
5269 O_BomoIG10980_complete:A_BomoIG_DN31381_c3_g5_i1
168bp
5270 O_BomoIG10981_complete:A_BomoIG_DN31381_c3_g5_i1
126bp
5271 O_BomoIG10982_complete:A_BomoIG_DN31381_c3_g5_i1
106bp
5272 O_BomoIG10983_complete:A_BomoIG_DN31381_c3_g1_i2
724bp
 PREDICTED:_FACT_complex_subunit_Ssrp1_[Amyelois_transitella]
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
5273 O_BomoIG10984_complete:A_BomoIG_DN31381_c3_g1_i2
158bp
5274 O_BomoIG10985_complete:A_BomoIG_DN31381_c3_g1_i3
235bp
 PREDICTED:_FACT_complex_subunit_Ssrp1_[Papilio_machaon]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
5275 O_BomoIG10986_complete:A_BomoIG_DN31381_c3_g9_i1
173bp
 28S_ribosomal_protein_S24,_mitochondrial_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005761 C mitochondrial ribosome
GO:0005763 C mitochondrial small ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
5276 O_BomoIG10987_3prime_partial:A_BomoIG_DN31381_c3_g9_i1
109bp
5277 O_BomoIG10988_complete:A_BomoIG_DN31381_c3_g3_i3
112bp
5278 O_BomoIG10989_complete:A_BomoIG_DN31381_c3_g9_i2
173bp
 28S_ribosomal_protein_S24,_mitochondrial_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005761 C mitochondrial ribosome
GO:0005763 C mitochondrial small ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
5279 O_BomoIG1098_complete:A_BomoIG_DN30255_c2_g1_i5
145bp
5280 O_BomoIG10990_complete:A_BomoIG_DN31381_c3_g5_i2
479bp
 RNA_polymerase-associated_protein_Rtf1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007219 P Notch signaling pathway
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0035327 C euchromatin
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0045747 P positive regulation of Notch signaling pathway
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0051568 P histone H3-K4 methylation
GO:0051571 P positive regulation of histone H3-K4 methylation
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