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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
391 O_BomoIG100352_3prime_partial:A_BomoIG_DN31576_c0_g1_i5
1463bp
 proteasome_activator_complex_subunit_4_isoform_X2_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0010952 P positive regulation of peptidase activity
GO:0016504 F peptidase activator activity
GO:0016607 C nuclear speck
GO:0030154 P cell differentiation
GO:0035093 P spermatogenesis, exchange of chromosomal proteins
GO:0070577 F lysine-acetylated histone binding
GO:1990111 C spermatoproteasome complex
392 O_BomoIG100353_complete:A_BomoIG_DN31576_c0_g1_i5
199bp
393 O_BomoIG100354_complete:A_BomoIG_DN31576_c0_g1_i5
138bp
394 O_BomoIG100355_complete:A_BomoIG_DN31576_c0_g1_i5
131bp
395 O_BomoIG100356_5prime_partial:A_BomoIG_DN31576_c0_g1_i6
157bp
396 O_BomoIG100357_5prime_partial:A_BomoIG_DN31576_c0_g1_i6
155bp
 proteasome_activator_complex_subunit_4_isoform_X2_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0010952 P positive regulation of peptidase activity
GO:0016504 F peptidase activator activity
GO:0016607 C nuclear speck
GO:0035093 P spermatogenesis, exchange of chromosomal proteins
GO:0070577 F lysine-acetylated histone binding
GO:1990111 C spermatoproteasome complex
397 O_BomoIG100358_3prime_partial:A_BomoIG_DN31576_c0_g1_i7
1305bp
 proteasome_activator_complex_subunit_4_isoform_X2_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0010952 P positive regulation of peptidase activity
GO:0016504 F peptidase activator activity
GO:0016607 C nuclear speck
GO:0030154 P cell differentiation
GO:0035093 P spermatogenesis, exchange of chromosomal proteins
GO:0070577 F lysine-acetylated histone binding
GO:1990111 C spermatoproteasome complex
398 O_BomoIG100359_5prime_partial:A_BomoIG_DN31576_c0_g1_i7
156bp
399 O_BomoIG10035_5prime_partial:A_BomoIG_DN33729_c1_g1_i14
105bp
400 O_BomoIG100360_complete:A_BomoIG_DN31576_c0_g1_i7
138bp
401 O_BomoIG100361_complete:A_BomoIG_DN31576_c0_g1_i7
131bp
402 O_BomoIG100362_3prime_partial:A_BomoIG_DN31576_c0_g1_i8
1351bp
 proteasome_activator_complex_subunit_4_isoform_X2_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0010952 P positive regulation of peptidase activity
GO:0016504 F peptidase activator activity
GO:0016607 C nuclear speck
GO:0030154 P cell differentiation
GO:0035093 P spermatogenesis, exchange of chromosomal proteins
GO:0070577 F lysine-acetylated histone binding
GO:1990111 C spermatoproteasome complex
403 O_BomoIG100363_complete:A_BomoIG_DN31576_c0_g1_i8
199bp
404 O_BomoIG100364_complete:A_BomoIG_DN31576_c0_g1_i8
138bp
405 O_BomoIG100365_complete:A_BomoIG_DN31576_c0_g1_i8
131bp
406 O_BomoIG100366_complete:A_BomoIG_DN31576_c0_g1_i9
892bp
 proteasome_activator_complex_subunit_4_isoform_X2_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0010952 P positive regulation of peptidase activity
GO:0016504 F peptidase activator activity
GO:0016607 C nuclear speck
GO:0035093 P spermatogenesis, exchange of chromosomal proteins
GO:0070577 F lysine-acetylated histone binding
GO:1990111 C spermatoproteasome complex
407 O_BomoIG100367_complete:A_BomoIG_DN31576_c0_g1_i10
169bp
 proteasome_activator_complex_subunit_4_isoform_X1_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0010952 P positive regulation of peptidase activity
GO:0016504 F peptidase activator activity
GO:0016607 C nuclear speck
GO:0030154 P cell differentiation
GO:0035093 P spermatogenesis, exchange of chromosomal proteins
GO:0070577 F lysine-acetylated histone binding
GO:1990111 C spermatoproteasome complex
408 O_BomoIG100368_5prime_partial:A_BomoIG_DN31576_c0_g1_i10
157bp
409 O_BomoIG100369_3prime_partial:A_BomoIG_DN31576_c0_g1_i11
279bp
 proteasome_activator_complex_subunit_4_isoform_X2_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0010952 P positive regulation of peptidase activity
GO:0016504 F peptidase activator activity
GO:0016607 C nuclear speck
GO:0030154 P cell differentiation
GO:0035093 P spermatogenesis, exchange of chromosomal proteins
GO:0070577 F lysine-acetylated histone binding
GO:1990111 C spermatoproteasome complex
410 O_BomoIG10036_complete:A_BomoIG_DN33729_c1_g1_i15
165bp
411 O_BomoIG100370_3prime_partial:A_BomoIG_DN31576_c0_g1_i12
1696bp
 proteasome_activator_complex_subunit_4_isoform_X2_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0010952 P positive regulation of peptidase activity
GO:0016504 F peptidase activator activity
GO:0016607 C nuclear speck
GO:0035093 P spermatogenesis, exchange of chromosomal proteins
GO:0070577 F lysine-acetylated histone binding
GO:1990111 C spermatoproteasome complex
412 O_BomoIG100371_complete:A_BomoIG_DN31576_c0_g1_i12
199bp
413 O_BomoIG100372_complete:A_BomoIG_DN31576_c0_g1_i12
138bp
414 O_BomoIG100373_complete:A_BomoIG_DN31576_c0_g1_i12
131bp
415 O_BomoIG100374_3prime_partial:A_BomoIG_DN31576_c0_g1_i13
317bp
 proteasome_activator_complex_subunit_4_isoform_X1_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0010952 P positive regulation of peptidase activity
GO:0016504 F peptidase activator activity
GO:0016607 C nuclear speck
GO:0030154 P cell differentiation
GO:0035093 P spermatogenesis, exchange of chromosomal proteins
GO:0070577 F lysine-acetylated histone binding
GO:1990111 C spermatoproteasome complex
416 O_BomoIG100375_5prime_partial:A_BomoIG_DN31576_c0_g1_i13
156bp
417 O_BomoIG100376_complete:A_BomoIG_DN31576_c0_g1_i13
138bp
418 O_BomoIG100377_3prime_partial:A_BomoIG_DN31563_c2_g1_i1
140bp
 craniofacial_development_protein_2-like_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
419 O_BomoIG100378_5prime_partial:A_BomoIG_DN31563_c2_g1_i1
103bp
 PREDICTED:_uncharacterized_protein_LOC106711352_[Papilio_machaon]
420 O_BomoIG100379_complete:A_BomoIG_DN31563_c2_g4_i1
704bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
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