SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/104180
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
421 O_BomoIG10037_complete:A_BomoIG_DN33729_c1_g1_i15
147bp
 protein_Skeletor,_isoforms_B/C_[Bombyx_mori]
GO:0005198 F structural molecule activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0006997 P nucleus organization
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016363 C nuclear matrix
GO:0051225 P spindle assembly
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
422 O_BomoIG100380_complete:A_BomoIG_DN31563_c2_g4_i1
182bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC110378190_[Helicoverpa_armigera]
423 O_BomoIG100381_5prime_partial:A_BomoIG_DN31563_c2_g4_i1
110bp
 PREDICTED:_actin-related_protein_1_[Papilio_machaon]
424 O_BomoIG100382_3prime_partial:A_BomoIG_DN31563_c2_g4_i1
106bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
425 O_BomoIG100383_5prime_partial:A_BomoIG_DN31563_c2_g4_i2
110bp
 PREDICTED:_actin-related_protein_1_[Papilio_machaon]
426 O_BomoIG100384_3prime_partial:A_BomoIG_DN31563_c2_g4_i2
106bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
427 O_BomoIG100385_3prime_partial:A_BomoIG_DN31563_c2_g1_i2
140bp
 craniofacial_development_protein_2-like_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
428 O_BomoIG100386_5prime_partial:A_BomoIG_DN31537_c5_g1_i4
328bp
 phospholipase_C_beta_1_[Bombyx_mori]
GO:0004435 F phosphatidylinositol phospholipase C activity
GO:0004871 F obsolete signal transducer activity
GO:0005509 F calcium ion binding
GO:0005622 C intracellular anatomical structure
GO:0005623 C obsolete cell
GO:0006629 P lipid metabolic process
GO:0006651 P diacylglycerol biosynthetic process
GO:0006661 P phosphatidylinositol biosynthetic process
GO:0007165 P signal transduction
GO:0007629 P flight behavior
GO:0008081 F phosphoric diester hydrolase activity
GO:0016042 P lipid catabolic process
GO:0016787 F hydrolase activity
GO:0035556 P intracellular signal transduction
GO:0070050 P neuron cellular homeostasis
GO:1900073 P regulation of neuromuscular synaptic transmission
429 O_BomoIG100387_5prime_partial:A_BomoIG_DN31537_c5_g1_i6
348bp
 phospholipase_C_beta_1_[Bombyx_mori]
GO:0004435 F phosphatidylinositol phospholipase C activity
GO:0004871 F obsolete signal transducer activity
GO:0005509 F calcium ion binding
GO:0005622 C intracellular anatomical structure
GO:0005623 C obsolete cell
GO:0006629 P lipid metabolic process
GO:0006651 P diacylglycerol biosynthetic process
GO:0006661 P phosphatidylinositol biosynthetic process
GO:0007165 P signal transduction
GO:0007629 P flight behavior
GO:0008081 F phosphoric diester hydrolase activity
GO:0016042 P lipid catabolic process
GO:0016787 F hydrolase activity
GO:0035556 P intracellular signal transduction
GO:0070050 P neuron cellular homeostasis
GO:1900073 P regulation of neuromuscular synaptic transmission
430 O_BomoIG100388_5prime_partial:A_BomoIG_DN31537_c5_g1_i6
102bp
431 O_BomoIG100389_complete:A_BomoIG_DN31537_c6_g1_i1
108bp
432 O_BomoIG10038_complete:A_BomoIG_DN33729_c2_g1_i1
179bp
 F-box_only_protein_9_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0019005 C SCF ubiquitin ligase complex
GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0032006 P regulation of TOR signaling
GO:0045087 P innate immune response
GO:0045444 P fat cell differentiation
433 O_BomoIG100390_5prime_partial:A_BomoIG_DN31548_c3_g1_i1
307bp
 guanine_nucleotide-binding_protein-like_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0006974 P cellular response to DNA damage stimulus
434 O_BomoIG100391_complete:A_BomoIG_DN31548_c3_g1_i1
121bp
435 O_BomoIG100392_complete:A_BomoIG_DN31548_c3_g1_i2
558bp
 guanine_nucleotide-binding_protein-like_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0006974 P cellular response to DNA damage stimulus
436 O_BomoIG100393_complete:A_BomoIG_DN31548_c3_g1_i2
121bp
437 O_BomoIG100394_complete:A_BomoIG_DN31548_c3_g1_i3
558bp
 guanine_nucleotide-binding_protein-like_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0006974 P cellular response to DNA damage stimulus
438 O_BomoIG100395_complete:A_BomoIG_DN31548_c3_g1_i3
121bp
439 O_BomoIG100396_complete:A_BomoIG_DN31548_c3_g1_i4
330bp
 guanine_nucleotide-binding_protein-like_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0006974 P cellular response to DNA damage stimulus
GO:0042254 P ribosome biogenesis
440 O_BomoIG100397_complete:A_BomoIG_DN31548_c4_g6_i1
246bp
 upf3_regulator_of_nonsense_transcripts-like_protein_B_isoform_X1_[Bombyx_mori]
441 O_BomoIG100398_complete:A_BomoIG_DN31548_c4_g6_i2
111bp
 upf3_regulator_of_nonsense_transcripts-like_protein_B_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0006369 P termination of RNA polymerase II transcription
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0031124 P mRNA 3'-end processing
GO:0035145 C exon-exon junction complex
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0051028 P mRNA transport
442 O_BomoIG100399_complete:A_BomoIG_DN31548_c4_g1_i4
132bp
 mediator_of_RNA_polymerase_II_transcription_subunit_10_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
GO:0070847 C core mediator complex
443 O_BomoIG10039_complete:A_BomoIG_DN33729_c2_g1_i1
141bp
444 O_BomoIG1003_5prime_partial:A_BomoIG_DN30229_c1_g1_i4
276bp
 Golgi-specific_brefeldin_A-resistance_guanine_nucleotide_exchange_factor_1,_partial_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0002263 P cell activation involved in immune response
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005547 F phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0005788 C endoplasmic reticulum lumen
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0005801 C cis-Golgi network
GO:0005802 C trans-Golgi network
GO:0005811 C lipid droplet
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006892 P post-Golgi vesicle-mediated transport
GO:0006895 P Golgi to endosome transport
GO:0007030 P Golgi organization
GO:0007346 P regulation of mitotic cell cycle
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0030593 P neutrophil chemotaxis
GO:0031252 C cell leading edge
GO:0032012 P regulation of ARF protein signal transduction
GO:0034067 P protein localization to Golgi apparatus
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043547 P positive regulation of GTPase activity
GO:0048205 P COPI coating of Golgi vesicle
GO:0061162 P establishment of monopolar cell polarity
GO:0070973 P protein localization to endoplasmic reticulum exit site
GO:0080025 F phosphatidylinositol-3,5-bisphosphate binding
GO:0090166 P Golgi disassembly
GO:0097111 P endoplasmic reticulum-Golgi intermediate compartment organization
GO:1903409 P reactive oxygen species biosynthetic process
GO:1903420 P protein localization to endoplasmic reticulum tubular network
GO:2000008 P regulation of protein localization to cell surface
445 O_BomoIG100400_complete:A_BomoIG_DN31548_c4_g6_i4
500bp
 Upf3_regulator_of_nonsense_transcripts-like_protein_B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 F RNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0035145 C exon-exon junction complex
GO:0042162 F telomeric DNA binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0045727 P positive regulation of translation
GO:0051028 P mRNA transport
446 O_BomoIG100401_complete:A_BomoIG_DN31548_c4_g6_i5
230bp
 Upf3_regulator_of_nonsense_transcripts-like_protein_B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0006369 P termination of RNA polymerase II transcription
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0031124 P mRNA 3'-end processing
GO:0035145 C exon-exon junction complex
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0051028 P mRNA transport
447 O_BomoIG100402_complete:A_BomoIG_DN31581_c0_g4_i1
284bp
 annexin_isoform_X3_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0005543 F phospholipid binding
GO:0005544 F calcium-dependent phospholipid binding
GO:0008150 P biological_process
GO:0016020 C membrane
448 O_BomoIG100403_complete:A_BomoIG_DN31581_c0_g4_i1
169bp
449 O_BomoIG100404_complete:A_BomoIG_DN31581_c0_g4_i2
167bp
 annexin_isoform_X5_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0005543 F phospholipid binding
GO:0005544 F calcium-dependent phospholipid binding
GO:0008150 P biological_process
GO:0016020 C membrane
450 O_BomoIG100405_5prime_partial:A_BomoIG_DN31581_c0_g4_i2
163bp
previous next from show/104180

- SilkBase 1999-2023 -