SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/104180
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2701 O_BomoIG102431_complete:A_BomoIG_DN30739_c0_g1_i15
116bp
2702 O_BomoIG102432_complete:A_BomoIG_DN30739_c0_g1_i16
1324bp
 THO_complex_subunit_2_isoform_X2_[Bombyx_mori]
GO:0000346 C transcription export complex
GO:0000347 C THO complex
GO:0000445 C THO complex part of transcription export complex
GO:0000784 C chromosome, telomeric region
GO:0000902 P cell morphogenesis
GO:0001824 P blastocyst development
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0010793 P regulation of mRNA export from nucleus
GO:0016607 C nuclear speck
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0017145 P stem cell division
GO:0046784 P viral mRNA export from host cell nucleus
GO:0048666 P neuron development
GO:0048699 P generation of neurons
GO:0051028 P mRNA transport
2703 O_BomoIG102433_complete:A_BomoIG_DN30739_c0_g1_i16
166bp
2704 O_BomoIG102434_complete:A_BomoIG_DN30739_c0_g1_i16
116bp
2705 O_BomoIG102435_complete:A_BomoIG_DN30739_c0_g1_i17
1324bp
 THO_complex_subunit_2_isoform_X2_[Bombyx_mori]
GO:0000346 C transcription export complex
GO:0000347 C THO complex
GO:0000445 C THO complex part of transcription export complex
GO:0000784 C chromosome, telomeric region
GO:0000902 P cell morphogenesis
GO:0001824 P blastocyst development
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0010793 P regulation of mRNA export from nucleus
GO:0016607 C nuclear speck
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0017145 P stem cell division
GO:0046784 P viral mRNA export from host cell nucleus
GO:0048666 P neuron development
GO:0048699 P generation of neurons
GO:0051028 P mRNA transport
2706 O_BomoIG102436_complete:A_BomoIG_DN30739_c0_g1_i17
166bp
2707 O_BomoIG102437_complete:A_BomoIG_DN30739_c0_g1_i17
116bp
2708 O_BomoIG102438_complete:A_BomoIG_DN30771_c0_g1_i2
1333bp
 tripeptidyl-peptidase_2_isoform_X1_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0004175 F endopeptidase activity
GO:0004177 F aminopeptidase activity
GO:0004252 F serine-type endopeptidase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0008240 F tripeptidyl-peptidase activity
GO:0016787 F hydrolase activity
GO:0042277 F peptide binding
2709 O_BomoIG102439_complete:A_BomoIG_DN30771_c0_g1_i2
166bp
2710 O_BomoIG10243_3prime_partial:A_BomoIG_DN33753_c2_g1_i3
101bp
 miniparamyosin,_partial_[Bombyx_mori]
GO:0003774 F cytoskeletal motor activity
GO:0005737 C cytoplasm
GO:0005863 C striated muscle myosin thick filament
GO:0007498 P mesoderm development
GO:0008152 P metabolic process
GO:0008307 F structural constituent of muscle
GO:0016459 C myosin complex
GO:0030016 C myofibril
GO:0030239 P myofibril assembly
GO:0032982 C myosin filament
2711 O_BomoIG102440_complete:A_BomoIG_DN30771_c0_g1_i3
1268bp
 tripeptidyl-peptidase_2_isoform_X1_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0004175 F endopeptidase activity
GO:0004177 F aminopeptidase activity
GO:0004252 F serine-type endopeptidase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0008240 F tripeptidyl-peptidase activity
GO:0016787 F hydrolase activity
GO:0042277 F peptide binding
2712 O_BomoIG102441_complete:A_BomoIG_DN30771_c0_g1_i3
166bp
2713 O_BomoIG102442_complete:A_BomoIG_DN30771_c0_g1_i4
1043bp
 tripeptidyl-peptidase_2_isoform_X1_[Bombyx_mori]
GO:0004177 F aminopeptidase activity
GO:0004252 F serine-type endopeptidase activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0008238 F exopeptidase activity
GO:0008240 F tripeptidyl-peptidase activity
GO:0016787 F hydrolase activity
GO:0051260 P protein homooligomerization
2714 O_BomoIG102443_complete:A_BomoIG_DN30771_c0_g1_i4
166bp
2715 O_BomoIG102444_complete:A_BomoIG_DN30771_c0_g1_i6
1342bp
 tripeptidyl-peptidase_2_isoform_X1_[Bombyx_mori]
GO:0004177 F aminopeptidase activity
GO:0004252 F serine-type endopeptidase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0008240 F tripeptidyl-peptidase activity
GO:0016787 F hydrolase activity
GO:0042277 F peptide binding
2716 O_BomoIG102445_complete:A_BomoIG_DN30771_c0_g1_i6
166bp
2717 O_BomoIG102446_complete:A_BomoIG_DN30771_c0_g1_i7
1277bp
 tripeptidyl-peptidase_2_isoform_X1_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0004175 F endopeptidase activity
GO:0004177 F aminopeptidase activity
GO:0004252 F serine-type endopeptidase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0008240 F tripeptidyl-peptidase activity
GO:0016787 F hydrolase activity
GO:0042277 F peptide binding
2718 O_BomoIG102447_complete:A_BomoIG_DN30771_c0_g1_i7
166bp
2719 O_BomoIG102448_complete:A_BomoIG_DN30774_c0_g4_i1
253bp
 dysbindin_protein_homolog_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007614 P short-term memory
GO:0007616 P long-term memory
GO:0008021 C synaptic vesicle
GO:0008057 P eye pigment granule organization
GO:0008344 P adult locomotory behavior
GO:0008355 P olfactory learning
GO:0031083 C BLOC-1 complex
GO:0045963 P negative regulation of dopamine metabolic process
GO:0048047 P mating behavior, sex discrimination
GO:0048167 P regulation of synaptic plasticity
GO:0050807 P regulation of synapse organization
GO:0051968 P positive regulation of synaptic transmission, glutamatergic
GO:0098527 C neuromuscular junction of somatic muscle
GO:1900073 P regulation of neuromuscular synaptic transmission
2720 O_BomoIG102449_3prime_partial:A_BomoIG_DN30774_c0_g1_i2
404bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X5_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
2721 O_BomoIG10244_3prime_partial:A_BomoIG_DN33753_c2_g3_i5
139bp
2722 O_BomoIG102450_complete:A_BomoIG_DN30774_c0_g1_i2
190bp
 uncharacterized_protein_LOC110384942_[Bombyx_mori]
2723 O_BomoIG102451_complete:A_BomoIG_DN30774_c0_g1_i3
215bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X5_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
2724 O_BomoIG102452_3prime_partial:A_BomoIG_DN30774_c0_g1_i4
404bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X5_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
2725 O_BomoIG102453_complete:A_BomoIG_DN30774_c0_g1_i4
185bp
 uncharacterized_protein_LOC110384942_[Bombyx_mori]
2726 O_BomoIG102454_complete:A_BomoIG_DN30774_c0_g1_i5
380bp
 PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
2727 O_BomoIG102455_5prime_partial:A_BomoIG_DN30774_c0_g1_i6
121bp
 PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
2728 O_BomoIG102456_complete:A_BomoIG_DN30774_c0_g1_i6
105bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X5_[Papilio_machaon]
2729 O_BomoIG102457_complete:A_BomoIG_DN30774_c0_g1_i7
345bp
 PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
2730 O_BomoIG102458_3prime_partial:A_BomoIG_DN30774_c0_g1_i7
115bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X4_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
previous next from show/104180

- SilkBase 1999-2023 -