SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/104180
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2731 O_BomoIG102459_3prime_partial:A_BomoIG_DN30774_c0_g1_i8
404bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X5_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
2732 O_BomoIG10245_internal:A_BomoIG_DN33792_c3_g5_i1
126bp
 PREDICTED:_uncharacterized_protein_LOC105564750,_partial_[Vollenhovia_emeryi]
2733 O_BomoIG102460_complete:A_BomoIG_DN30774_c0_g1_i8
345bp
 PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
2734 O_BomoIG102461_complete:A_BomoIG_DN30774_c0_g1_i9
187bp
 hypothetical_protein_RR48_12638_[Papilio_machaon]
2735 O_BomoIG102462_complete:A_BomoIG_DN30774_c0_g1_i10
345bp
 PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
2736 O_BomoIG102463_3prime_partial:A_BomoIG_DN30774_c0_g1_i10
256bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X5_[Papilio_machaon]
GO:0003824 F catalytic activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
2737 O_BomoIG102464_internal:A_BomoIG_DN30774_c0_g3_i5
126bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X1_[Papilio_xuthus]
2738 O_BomoIG102465_internal:A_BomoIG_DN30774_c0_g3_i6
147bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X1_[Papilio_xuthus]
2739 O_BomoIG102466_complete:A_BomoIG_DN30774_c0_g4_i3
253bp
 dysbindin_protein_homolog_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007614 P short-term memory
GO:0007616 P long-term memory
GO:0008021 C synaptic vesicle
GO:0008057 P eye pigment granule organization
GO:0008344 P adult locomotory behavior
GO:0008355 P olfactory learning
GO:0031083 C BLOC-1 complex
GO:0045963 P negative regulation of dopamine metabolic process
GO:0048047 P mating behavior, sex discrimination
GO:0048167 P regulation of synaptic plasticity
GO:0050807 P regulation of synapse organization
GO:0051968 P positive regulation of synaptic transmission, glutamatergic
GO:0098527 C neuromuscular junction of somatic muscle
GO:1900073 P regulation of neuromuscular synaptic transmission
2740 O_BomoIG102467_complete:A_BomoIG_DN30774_c0_g1_i11
107bp
 PREDICTED:_zinc_finger_BED_domain-containing_protein_4-like_[Tribolium_castaneum]
2741 O_BomoIG102468_internal:A_BomoIG_DN30774_c0_g1_i12
266bp
 PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
GO:0046872 F metal ion binding
2742 O_BomoIG102469_complete:A_BomoIG_DN30774_c0_g1_i13
215bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X5_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
2743 O_BomoIG10246_3prime_partial:A_BomoIG_DN33792_c3_g4_i4
556bp
 retroelement_polyprotein_[Glyptapanteles_flavicoxis]
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
2744 O_BomoIG102470_5prime_partial:A_BomoIG_DN30774_c0_g1_i13
121bp
 PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
2745 O_BomoIG102471_3prime_partial:A_BomoIG_DN30774_c0_g1_i13
115bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X4_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
2746 O_BomoIG102472_complete:A_BomoIG_DN30726_c2_g2_i1
497bp
 LOW_QUALITY_PROTEIN:_glutamate_decarboxylase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004351 F glutamate decarboxylase activity
GO:0005829 C cytosol
GO:0006538 P glutamate catabolic process
GO:0007416 P synapse assembly
GO:0007528 P neuromuscular junction development
GO:0008345 P larval locomotory behavior
GO:0008355 P olfactory learning
GO:0009449 P gamma-aminobutyric acid biosynthetic process
GO:0009612 P response to mechanical stimulus
GO:0016829 F lyase activity
GO:0016831 F carboxy-lyase activity
GO:0019752 P carboxylic acid metabolic process
GO:0030170 F pyridoxal phosphate binding
GO:0042136 P neurotransmitter biosynthetic process
GO:0045213 P neurotransmitter receptor metabolic process
2747 O_BomoIG102473_complete:A_BomoIG_DN30726_c2_g2_i2
541bp
 LOW_QUALITY_PROTEIN:_glutamate_decarboxylase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004351 F glutamate decarboxylase activity
GO:0005829 C cytosol
GO:0006538 P glutamate catabolic process
GO:0007416 P synapse assembly
GO:0007528 P neuromuscular junction development
GO:0008345 P larval locomotory behavior
GO:0008355 P olfactory learning
GO:0009449 P gamma-aminobutyric acid biosynthetic process
GO:0009612 P response to mechanical stimulus
GO:0016829 F lyase activity
GO:0016831 F carboxy-lyase activity
GO:0019752 P carboxylic acid metabolic process
GO:0030170 F pyridoxal phosphate binding
GO:0042136 P neurotransmitter biosynthetic process
GO:0045213 P neurotransmitter receptor metabolic process
2748 O_BomoIG102474_complete:A_BomoIG_DN30726_c2_g2_i4
516bp
 LOW_QUALITY_PROTEIN:_glutamate_decarboxylase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004351 F glutamate decarboxylase activity
GO:0005829 C cytosol
GO:0006538 P glutamate catabolic process
GO:0007416 P synapse assembly
GO:0007528 P neuromuscular junction development
GO:0008345 P larval locomotory behavior
GO:0008355 P olfactory learning
GO:0009449 P gamma-aminobutyric acid biosynthetic process
GO:0009612 P response to mechanical stimulus
GO:0016829 F lyase activity
GO:0016831 F carboxy-lyase activity
GO:0019752 P carboxylic acid metabolic process
GO:0030170 F pyridoxal phosphate binding
GO:0042136 P neurotransmitter biosynthetic process
GO:0045213 P neurotransmitter receptor metabolic process
2749 O_BomoIG102475_complete:A_BomoIG_DN30726_c2_g2_i8
516bp
 LOW_QUALITY_PROTEIN:_glutamate_decarboxylase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004351 F glutamate decarboxylase activity
GO:0005829 C cytosol
GO:0006538 P glutamate catabolic process
GO:0007416 P synapse assembly
GO:0007528 P neuromuscular junction development
GO:0008345 P larval locomotory behavior
GO:0008355 P olfactory learning
GO:0009449 P gamma-aminobutyric acid biosynthetic process
GO:0009612 P response to mechanical stimulus
GO:0016829 F lyase activity
GO:0016831 F carboxy-lyase activity
GO:0019752 P carboxylic acid metabolic process
GO:0030170 F pyridoxal phosphate binding
GO:0042136 P neurotransmitter biosynthetic process
GO:0045213 P neurotransmitter receptor metabolic process
2750 O_BomoIG102476_complete:A_BomoIG_DN30726_c2_g2_i9
484bp
 LOW_QUALITY_PROTEIN:_glutamate_decarboxylase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004351 F glutamate decarboxylase activity
GO:0005829 C cytosol
GO:0006538 P glutamate catabolic process
GO:0007416 P synapse assembly
GO:0007528 P neuromuscular junction development
GO:0008345 P larval locomotory behavior
GO:0008355 P olfactory learning
GO:0009449 P gamma-aminobutyric acid biosynthetic process
GO:0009612 P response to mechanical stimulus
GO:0016829 F lyase activity
GO:0016831 F carboxy-lyase activity
GO:0019752 P carboxylic acid metabolic process
GO:0030170 F pyridoxal phosphate binding
GO:0042136 P neurotransmitter biosynthetic process
GO:0045213 P neurotransmitter receptor metabolic process
2751 O_BomoIG102477_complete:A_BomoIG_DN30726_c2_g2_i10
516bp
 LOW_QUALITY_PROTEIN:_glutamate_decarboxylase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004351 F glutamate decarboxylase activity
GO:0005829 C cytosol
GO:0006538 P glutamate catabolic process
GO:0007416 P synapse assembly
GO:0007528 P neuromuscular junction development
GO:0008345 P larval locomotory behavior
GO:0008355 P olfactory learning
GO:0009449 P gamma-aminobutyric acid biosynthetic process
GO:0009612 P response to mechanical stimulus
GO:0016829 F lyase activity
GO:0016831 F carboxy-lyase activity
GO:0019752 P carboxylic acid metabolic process
GO:0030170 F pyridoxal phosphate binding
GO:0042136 P neurotransmitter biosynthetic process
GO:0045213 P neurotransmitter receptor metabolic process
2752 O_BomoIG102478_complete:A_BomoIG_DN30726_c2_g3_i2
718bp
 protein_SDA1_homolog_[Bombyx_mori]
GO:0000055 P ribosomal large subunit export from nucleus
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006810 P transport
GO:0015031 P protein transport
GO:0022008 P neurogenesis
GO:0030036 P actin cytoskeleton organization
GO:0042254 P ribosome biogenesis
GO:0042273 P ribosomal large subunit biogenesis
2753 O_BomoIG102479_complete:A_BomoIG_DN30726_c2_g3_i2
143bp
2754 O_BomoIG10247_complete:A_BomoIG_DN33792_c3_g4_i4
393bp
 PREDICTED:_uncharacterized_protein_LOC105564750,_partial_[Vollenhovia_emeryi]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
2755 O_BomoIG102480_complete:A_BomoIG_DN30726_c2_g5_i1
155bp
 uncharacterized_protein_LOC101742051_isoform_X2_[Bombyx_mori]
2756 O_BomoIG102481_complete:A_BomoIG_DN30726_c2_g5_i1
116bp
 uncharacterized_protein_LOC101742051_isoform_X1_[Bombyx_mori]
2757 O_BomoIG102482_complete:A_BomoIG_DN30726_c2_g5_i1
103bp
2758 O_BomoIG102483_complete:A_BomoIG_DN30726_c2_g5_i2
116bp
 uncharacterized_protein_LOC101742051_isoform_X1_[Bombyx_mori]
2759 O_BomoIG102484_complete:A_BomoIG_DN30726_c2_g5_i2
106bp
 uncharacterized_protein_LOC101742051_isoform_X2_[Bombyx_mori]
2760 O_BomoIG102485_complete:A_BomoIG_DN30726_c2_g5_i2
103bp
previous next from show/104180

- SilkBase 1999-2023 -