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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2671 O_BomoIG102404_complete:A_BomoIG_DN30739_c0_g1_i1
166bp
2672 O_BomoIG102405_complete:A_BomoIG_DN30739_c0_g1_i1
116bp
2673 O_BomoIG102406_complete:A_BomoIG_DN30739_c0_g1_i3
922bp
 THO_complex_subunit_2_isoform_X1_[Bombyx_mori]
GO:0000346 C transcription export complex
GO:0000347 C THO complex
GO:0000445 C THO complex part of transcription export complex
GO:0000784 C chromosome, telomeric region
GO:0000902 P cell morphogenesis
GO:0001824 P blastocyst development
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0010793 P regulation of mRNA export from nucleus
GO:0016607 C nuclear speck
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0017145 P stem cell division
GO:0046784 P viral mRNA export from host cell nucleus
GO:0048666 P neuron development
GO:0048699 P generation of neurons
GO:0051028 P mRNA transport
2674 O_BomoIG102407_complete:A_BomoIG_DN30739_c0_g1_i3
166bp
2675 O_BomoIG102408_complete:A_BomoIG_DN30739_c0_g1_i3
116bp
2676 O_BomoIG102409_complete:A_BomoIG_DN30739_c0_g1_i4
302bp
 THO_complex_subunit_2_isoform_X2_[Bombyx_mori]
GO:0000346 C transcription export complex
GO:0000347 C THO complex
GO:0000445 C THO complex part of transcription export complex
GO:0000784 C chromosome, telomeric region
GO:0000902 P cell morphogenesis
GO:0001824 P blastocyst development
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0010793 P regulation of mRNA export from nucleus
GO:0016607 C nuclear speck
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0017145 P stem cell division
GO:0046784 P viral mRNA export from host cell nucleus
GO:0048666 P neuron development
GO:0048699 P generation of neurons
GO:0051028 P mRNA transport
2677 O_BomoIG10240_3prime_partial:A_BomoIG_DN33753_c2_g3_i3
168bp
2678 O_BomoIG102410_complete:A_BomoIG_DN30739_c0_g1_i5
1324bp
 THO_complex_subunit_2_isoform_X2_[Bombyx_mori]
GO:0000346 C transcription export complex
GO:0000347 C THO complex
GO:0000445 C THO complex part of transcription export complex
GO:0000784 C chromosome, telomeric region
GO:0000902 P cell morphogenesis
GO:0001824 P blastocyst development
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0010793 P regulation of mRNA export from nucleus
GO:0016607 C nuclear speck
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0017145 P stem cell division
GO:0046784 P viral mRNA export from host cell nucleus
GO:0048666 P neuron development
GO:0048699 P generation of neurons
GO:0051028 P mRNA transport
2679 O_BomoIG102411_complete:A_BomoIG_DN30739_c0_g1_i5
166bp
2680 O_BomoIG102412_complete:A_BomoIG_DN30739_c0_g1_i5
116bp
2681 O_BomoIG102413_complete:A_BomoIG_DN30739_c0_g1_i6
1324bp
 THO_complex_subunit_2_isoform_X2_[Bombyx_mori]
GO:0000346 C transcription export complex
GO:0000347 C THO complex
GO:0000445 C THO complex part of transcription export complex
GO:0000784 C chromosome, telomeric region
GO:0000902 P cell morphogenesis
GO:0001824 P blastocyst development
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0010793 P regulation of mRNA export from nucleus
GO:0016607 C nuclear speck
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0017145 P stem cell division
GO:0046784 P viral mRNA export from host cell nucleus
GO:0048666 P neuron development
GO:0048699 P generation of neurons
GO:0051028 P mRNA transport
2682 O_BomoIG102414_complete:A_BomoIG_DN30739_c0_g1_i6
166bp
2683 O_BomoIG102415_complete:A_BomoIG_DN30739_c0_g1_i6
116bp
2684 O_BomoIG102416_complete:A_BomoIG_DN30739_c0_g1_i7
1324bp
 THO_complex_subunit_2_isoform_X2_[Bombyx_mori]
GO:0000346 C transcription export complex
GO:0000347 C THO complex
GO:0000445 C THO complex part of transcription export complex
GO:0000784 C chromosome, telomeric region
GO:0000902 P cell morphogenesis
GO:0001824 P blastocyst development
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0010793 P regulation of mRNA export from nucleus
GO:0016607 C nuclear speck
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0017145 P stem cell division
GO:0046784 P viral mRNA export from host cell nucleus
GO:0048666 P neuron development
GO:0048699 P generation of neurons
GO:0051028 P mRNA transport
2685 O_BomoIG102417_complete:A_BomoIG_DN30739_c0_g1_i7
166bp
2686 O_BomoIG102418_complete:A_BomoIG_DN30739_c0_g1_i7
116bp
2687 O_BomoIG102419_complete:A_BomoIG_DN30739_c0_g1_i9
1324bp
 THO_complex_subunit_2_isoform_X2_[Bombyx_mori]
GO:0000346 C transcription export complex
GO:0000347 C THO complex
GO:0000445 C THO complex part of transcription export complex
GO:0000784 C chromosome, telomeric region
GO:0000902 P cell morphogenesis
GO:0001824 P blastocyst development
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0010793 P regulation of mRNA export from nucleus
GO:0016607 C nuclear speck
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0017145 P stem cell division
GO:0046784 P viral mRNA export from host cell nucleus
GO:0048666 P neuron development
GO:0048699 P generation of neurons
GO:0051028 P mRNA transport
2688 O_BomoIG10241_5prime_partial:A_BomoIG_DN33753_c2_g1_i3
199bp
 hypothetical_protein_ALC62_01585,_partial_[Cyphomyrmex_costatus]
2689 O_BomoIG102420_complete:A_BomoIG_DN30739_c0_g1_i9
166bp
2690 O_BomoIG102421_complete:A_BomoIG_DN30739_c0_g1_i9
120bp
 THO_complex_subunit_2_isoform_X1_[Bombyx_mori]
2691 O_BomoIG102422_complete:A_BomoIG_DN30739_c0_g1_i9
116bp
2692 O_BomoIG102423_complete:A_BomoIG_DN30739_c0_g1_i12
1324bp
 THO_complex_subunit_2_isoform_X2_[Bombyx_mori]
GO:0000346 C transcription export complex
GO:0000347 C THO complex
GO:0000445 C THO complex part of transcription export complex
GO:0000784 C chromosome, telomeric region
GO:0000902 P cell morphogenesis
GO:0001824 P blastocyst development
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0010793 P regulation of mRNA export from nucleus
GO:0016607 C nuclear speck
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0017145 P stem cell division
GO:0046784 P viral mRNA export from host cell nucleus
GO:0048666 P neuron development
GO:0048699 P generation of neurons
GO:0051028 P mRNA transport
2693 O_BomoIG102424_complete:A_BomoIG_DN30739_c0_g1_i12
166bp
2694 O_BomoIG102425_complete:A_BomoIG_DN30739_c0_g1_i12
116bp
2695 O_BomoIG102426_complete:A_BomoIG_DN30739_c0_g1_i14
1324bp
 THO_complex_subunit_2_isoform_X2_[Bombyx_mori]
GO:0000346 C transcription export complex
GO:0000347 C THO complex
GO:0000445 C THO complex part of transcription export complex
GO:0000784 C chromosome, telomeric region
GO:0000902 P cell morphogenesis
GO:0001824 P blastocyst development
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0010793 P regulation of mRNA export from nucleus
GO:0016607 C nuclear speck
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0017145 P stem cell division
GO:0046784 P viral mRNA export from host cell nucleus
GO:0048666 P neuron development
GO:0048699 P generation of neurons
GO:0051028 P mRNA transport
2696 O_BomoIG102427_complete:A_BomoIG_DN30739_c0_g1_i14
166bp
2697 O_BomoIG102428_complete:A_BomoIG_DN30739_c0_g1_i14
116bp
2698 O_BomoIG102429_complete:A_BomoIG_DN30739_c0_g1_i15
1324bp
 THO_complex_subunit_2_isoform_X2_[Bombyx_mori]
GO:0000346 C transcription export complex
GO:0000347 C THO complex
GO:0000445 C THO complex part of transcription export complex
GO:0000784 C chromosome, telomeric region
GO:0000902 P cell morphogenesis
GO:0001824 P blastocyst development
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0010793 P regulation of mRNA export from nucleus
GO:0016607 C nuclear speck
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0017145 P stem cell division
GO:0046784 P viral mRNA export from host cell nucleus
GO:0048666 P neuron development
GO:0048699 P generation of neurons
GO:0051028 P mRNA transport
2699 O_BomoIG10242_complete:A_BomoIG_DN33753_c2_g1_i3
124bp
2700 O_BomoIG102430_complete:A_BomoIG_DN30739_c0_g1_i15
166bp
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