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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2431 O_BomoBR102189_3prime_partial:A_BomoBR_DN29853_c3_g1_i7
436bp
 chromodomain-helicase-DNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
2432 O_BomoBR10218_complete:A_BomoBR_DN31374_c5_g2_i10
103bp
2433 O_BomoBR102190_complete:A_BomoBR_DN29853_c3_g1_i7
214bp
 chromodomain-helicase-DNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
2434 O_BomoBR102191_5prime_partial:A_BomoBR_DN29853_c3_g1_i7
114bp
2435 O_BomoBR102192_complete:A_BomoBR_DN29853_c3_g1_i7
113bp
2436 O_BomoBR102193_5prime_partial:A_BomoBR_DN29853_c3_g1_i7
110bp
2437 O_BomoBR102194_3prime_partial:A_BomoBR_DN29853_c3_g1_i7
108bp
2438 O_BomoBR102195_complete:A_BomoBR_DN29853_c3_g1_i7
102bp
2439 O_BomoBR102196_5prime_partial:A_BomoBR_DN29853_c3_g2_i12
217bp
 formin-like_protein_5_isoform_X2_[Bombyx_mori]
2440 O_BomoBR102197_complete:A_BomoBR_DN29853_c3_g1_i8
1812bp
 chromodomain-helicase-DNA-binding_protein_1_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
2441 O_BomoBR102198_complete:A_BomoBR_DN29853_c3_g1_i8
113bp
2442 O_BomoBR102199_complete:A_BomoBR_DN29853_c3_g1_i8
102bp
2443 O_BomoBR10219_complete:A_BomoBR_DN31374_c5_g2_i11
900bp
 aubergine_protein_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0001556 P oocyte maturation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0006342 P heterochromatin assembly
GO:0006417 P regulation of translation
GO:0006446 P regulation of translational initiation
GO:0007076 P mitotic chromosome condensation
GO:0007275 P multicellular organism development
GO:0007279 P pole cell formation
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0007318 P pole plasm protein localization
GO:0010529 P negative regulation of transposition
GO:0016246 P RNA interference
GO:0030154 P cell differentiation
GO:0030423 P targeting of mRNA for destruction involved in RNA interference
GO:0030717 P oocyte karyosome formation
GO:0031047 P gene silencing by RNA
GO:0034584 F piRNA binding
GO:0035282 P segmentation
GO:0043186 C P granule
GO:0045089 P positive regulation of innate immune response
GO:0046011 P regulation of oskar mRNA translation
GO:0046012 P positive regulation of oskar mRNA translation
GO:0046594 P maintenance of pole plasm mRNA location
GO:0046843 P dorsal appendage formation
GO:0048477 P oogenesis
GO:0050829 P defense response to Gram-negative bacterium
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
2444 O_BomoBR1021_5prime_partial:A_BomoBR_DN30295_c0_g1_i20
144bp
2445 O_BomoBR102200_complete:A_BomoBR_DN29853_c3_g1_i9
834bp
 chromodomain-helicase-DNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
2446 O_BomoBR102201_3prime_partial:A_BomoBR_DN29853_c3_g1_i9
436bp
 chromodomain-helicase-DNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
2447 O_BomoBR102202_complete:A_BomoBR_DN29853_c3_g1_i9
213bp
 chromodomain-helicase-DNA-binding_protein_1_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0001046 F core promoter sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007517 P muscle organ development
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
GO:0042393 F histone binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0060218 P hematopoietic stem cell differentiation
GO:0070062 C extracellular exosome
2448 O_BomoBR102203_5prime_partial:A_BomoBR_DN29853_c3_g1_i9
114bp
2449 O_BomoBR102204_complete:A_BomoBR_DN29853_c3_g1_i9
113bp
2450 O_BomoBR102205_5prime_partial:A_BomoBR_DN29853_c3_g1_i9
110bp
2451 O_BomoBR102206_3prime_partial:A_BomoBR_DN29853_c3_g1_i9
108bp
2452 O_BomoBR102207_complete:A_BomoBR_DN29853_c3_g1_i9
102bp
2453 O_BomoBR102208_complete:A_BomoBR_DN29853_c3_g1_i9
100bp
2454 O_BomoBR102209_complete:A_BomoBR_DN29853_c3_g2_i13
609bp
 formin-like_protein_5_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
2455 O_BomoBR10220_complete:A_BomoBR_DN31374_c5_g2_i11
128bp
2456 O_BomoBR102210_complete:A_BomoBR_DN29853_c3_g1_i11
909bp
 chromodomain-helicase-DNA-binding_protein_1_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
2457 O_BomoBR102211_3prime_partial:A_BomoBR_DN29853_c3_g1_i11
436bp
 chromodomain-helicase-DNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
2458 O_BomoBR102212_complete:A_BomoBR_DN29853_c3_g1_i11
179bp
 chromodomain-helicase-DNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
2459 O_BomoBR102213_5prime_partial:A_BomoBR_DN29853_c3_g1_i11
114bp
2460 O_BomoBR102214_complete:A_BomoBR_DN29853_c3_g1_i11
113bp
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