SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/103968
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2401 O_BomoBR102161_complete:A_BomoBR_DN29853_c3_g1_i4
906bp
 chromodomain-helicase-DNA-binding_protein_1_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
2402 O_BomoBR102162_3prime_partial:A_BomoBR_DN29853_c3_g1_i4
459bp
 chromodomain-helicase-DNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
2403 O_BomoBR102163_complete:A_BomoBR_DN29853_c3_g1_i4
214bp
 chromodomain-helicase-DNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
2404 O_BomoBR102164_5prime_partial:A_BomoBR_DN29853_c3_g1_i4
133bp
2405 O_BomoBR102165_5prime_partial:A_BomoBR_DN29853_c3_g1_i4
115bp
2406 O_BomoBR102166_complete:A_BomoBR_DN29853_c3_g1_i4
113bp
2407 O_BomoBR102167_complete:A_BomoBR_DN29853_c3_g1_i4
102bp
2408 O_BomoBR102168_complete:A_BomoBR_DN29853_c3_g2_i6
660bp
 formin-like_protein_5_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
2409 O_BomoBR102169_5prime_partial:A_BomoBR_DN29853_c3_g6_i1
541bp
 hypoxia_up-regulated_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
2410 O_BomoBR10216_complete:A_BomoBR_DN31374_c5_g2_i10
900bp
 aubergine_protein_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0001556 P oocyte maturation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0006342 P heterochromatin assembly
GO:0006417 P regulation of translation
GO:0006446 P regulation of translational initiation
GO:0007076 P mitotic chromosome condensation
GO:0007275 P multicellular organism development
GO:0007279 P pole cell formation
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0007318 P pole plasm protein localization
GO:0010529 P negative regulation of transposition
GO:0016246 P RNA interference
GO:0030154 P cell differentiation
GO:0030423 P targeting of mRNA for destruction involved in RNA interference
GO:0030717 P oocyte karyosome formation
GO:0031047 P gene silencing by RNA
GO:0034584 F piRNA binding
GO:0035282 P segmentation
GO:0043186 C P granule
GO:0045089 P positive regulation of innate immune response
GO:0046011 P regulation of oskar mRNA translation
GO:0046012 P positive regulation of oskar mRNA translation
GO:0046594 P maintenance of pole plasm mRNA location
GO:0046843 P dorsal appendage formation
GO:0048477 P oogenesis
GO:0050829 P defense response to Gram-negative bacterium
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
2411 O_BomoBR102170_complete:A_BomoBR_DN29853_c3_g6_i1
196bp
2412 O_BomoBR102171_complete:A_BomoBR_DN29853_c3_g6_i1
114bp
2413 O_BomoBR102172_5prime_partial:A_BomoBR_DN29853_c3_g7_i1
702bp
 TATA-binding_protein-associated_factor_172_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0035562 P negative regulation of chromatin binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0045892 P negative regulation of transcription, DNA-templated
2414 O_BomoBR102173_complete:A_BomoBR_DN29853_c3_g7_i1
155bp
2415 O_BomoBR102174_5prime_partial:A_BomoBR_DN29853_c3_g7_i1
135bp
2416 O_BomoBR102175_5prime_partial:A_BomoBR_DN29853_c3_g7_i2
569bp
 TATA-binding_protein-associated_factor_172_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0035562 P negative regulation of chromatin binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0045892 P negative regulation of transcription, DNA-templated
2417 O_BomoBR102176_complete:A_BomoBR_DN29853_c3_g7_i2
155bp
2418 O_BomoBR102177_5prime_partial:A_BomoBR_DN29853_c3_g7_i2
135bp
2419 O_BomoBR102178_5prime_partial:A_BomoBR_DN29853_c3_g1_i5
161bp
2420 O_BomoBR102179_3prime_partial:A_BomoBR_DN29853_c3_g1_i5
126bp
 Chromodomain-helicase-DNA-binding_protein_1_[Papilio_xuthus]
2421 O_BomoBR10217_complete:A_BomoBR_DN31374_c5_g2_i10
128bp
2422 O_BomoBR102180_5prime_partial:A_BomoBR_DN29853_c3_g1_i5
115bp
2423 O_BomoBR102181_5prime_partial:A_BomoBR_DN29853_c3_g2_i8
605bp
 formin-like_protein_5_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
2424 O_BomoBR102182_complete:A_BomoBR_DN29853_c3_g2_i9
302bp
 formin-like_protein_5_isoform_X1_[Bombyx_mori]
2425 O_BomoBR102183_5prime_partial:A_BomoBR_DN29853_c3_g8_i1
552bp
 adenosine_deaminase_AGSA_[Bombyx_mori]
GO:0004000 F adenosine deaminase activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005829 C cytosol
GO:0006154 P adenosine catabolic process
GO:0008083 F growth factor activity
GO:0008201 F heparin binding
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0019239 F deaminase activity
GO:0031685 F adenosine receptor binding
GO:0043103 P hypoxanthine salvage
GO:0043394 F proteoglycan binding
GO:0046103 P inosine biosynthetic process
GO:0046872 F metal ion binding
2426 O_BomoBR102184_complete:A_BomoBR_DN29853_c3_g2_i10
635bp
 formin-like_protein_5_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
2427 O_BomoBR102185_complete:A_BomoBR_DN29853_c3_g2_i11
297bp
 formin-like_protein_5_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008150 P biological_process
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
2428 O_BomoBR102186_internal:A_BomoBR_DN29853_c3_g1_i6
905bp
 chromodomain-helicase-DNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
2429 O_BomoBR102187_complete:A_BomoBR_DN29853_c3_g1_i6
113bp
2430 O_BomoBR102188_complete:A_BomoBR_DN29853_c3_g1_i7
906bp
 chromodomain-helicase-DNA-binding_protein_1_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
previous next from show/103968

- SilkBase 1999-2023 -