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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2461 O_BomoBR102215_5prime_partial:A_BomoBR_DN29853_c3_g1_i11
110bp
2462 O_BomoBR102216_3prime_partial:A_BomoBR_DN29853_c3_g1_i11
108bp
2463 O_BomoBR102217_complete:A_BomoBR_DN29853_c3_g1_i11
102bp
2464 O_BomoBR102218_complete:A_BomoBR_DN29853_c3_g1_i12
834bp
 chromodomain-helicase-DNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
2465 O_BomoBR102219_3prime_partial:A_BomoBR_DN29853_c3_g1_i12
459bp
 chromodomain-helicase-DNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
2466 O_BomoBR10221_complete:A_BomoBR_DN31374_c5_g2_i11
103bp
2467 O_BomoBR102220_complete:A_BomoBR_DN29853_c3_g1_i12
213bp
 chromodomain-helicase-DNA-binding_protein_1_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0001046 F core promoter sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007517 P muscle organ development
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
GO:0042393 F histone binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0060218 P hematopoietic stem cell differentiation
GO:0070062 C extracellular exosome
2468 O_BomoBR102221_5prime_partial:A_BomoBR_DN29853_c3_g1_i12
133bp
2469 O_BomoBR102222_5prime_partial:A_BomoBR_DN29853_c3_g1_i12
115bp
2470 O_BomoBR102223_complete:A_BomoBR_DN29853_c3_g1_i12
113bp
2471 O_BomoBR102224_complete:A_BomoBR_DN29853_c3_g1_i12
102bp
2472 O_BomoBR102225_complete:A_BomoBR_DN29853_c3_g1_i12
100bp
2473 O_BomoBR102226_complete:A_BomoBR_DN29853_c3_g7_i4
144bp
 TATA-binding_protein-associated_factor_172_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0035562 P negative regulation of chromatin binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0045892 P negative regulation of transcription, DNA-templated
2474 O_BomoBR102227_complete:A_BomoBR_DN29853_c3_g1_i13
909bp
 chromodomain-helicase-DNA-binding_protein_1_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
2475 O_BomoBR102228_3prime_partial:A_BomoBR_DN29853_c3_g1_i13
459bp
 chromodomain-helicase-DNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
2476 O_BomoBR102229_complete:A_BomoBR_DN29853_c3_g1_i13
179bp
 chromodomain-helicase-DNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
2477 O_BomoBR10222_5prime_partial:A_BomoBR_DN31308_c0_g1_i1
138bp
2478 O_BomoBR102230_5prime_partial:A_BomoBR_DN29853_c3_g1_i13
133bp
2479 O_BomoBR102231_5prime_partial:A_BomoBR_DN29853_c3_g1_i13
115bp
2480 O_BomoBR102232_complete:A_BomoBR_DN29853_c3_g1_i13
113bp
2481 O_BomoBR102233_complete:A_BomoBR_DN29853_c3_g1_i13
102bp
2482 O_BomoBR102234_3prime_partial:A_BomoBR_DN29853_c3_g10_i1
325bp
 formin-like_protein_5_isoform_X2_[Bombyx_mori]
2483 O_BomoBR102235_complete:A_BomoBR_DN29853_c3_g1_i14
1789bp
 chromodomain-helicase-DNA-binding_protein_1_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
2484 O_BomoBR102236_complete:A_BomoBR_DN29853_c3_g1_i14
139bp
2485 O_BomoBR102237_complete:A_BomoBR_DN29853_c3_g1_i14
113bp
2486 O_BomoBR102238_complete:A_BomoBR_DN29853_c3_g1_i14
102bp
2487 O_BomoBR102239_5prime_partial:A_BomoBR_DN29804_c3_g2_i1
102bp
2488 O_BomoBR10223_5prime_partial:A_BomoBR_DN31308_c0_g1_i1
121bp
2489 O_BomoBR102240_5prime_partial:A_BomoBR_DN29872_c2_g5_i7
131bp
2490 O_BomoBR102241_complete:A_BomoBR_DN29811_c6_g1_i1
654bp
 ubiquitin_thioesterase_trabid_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0007010 P cytoskeleton organization
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016055 P Wnt signaling pathway
GO:0016477 P cell migration
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035523 P protein K29-linked deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0070536 P protein K63-linked deubiquitination
GO:0071947 P protein deubiquitination involved in ubiquitin-dependent protein catabolic process
GO:1990168 P protein K33-linked deubiquitination
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