SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/103968
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2161 O_BomoBR101946_complete:A_BomoBR_DN29829_c0_g2_i4
102bp
 F-box_only_protein_11_isoform_X2_[Bombyx_mori]
2162 O_BomoBR101947_complete:A_BomoBR_DN29829_c0_g2_i5
848bp
 F-box_only_protein_11_isoform_X2_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006464 P cellular protein modification process
GO:0007605 P sensory perception of sound
GO:0008270 F zinc ion binding
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016567 P protein ubiquitination
GO:0035246 P peptidyl-arginine N-methylation
GO:0046872 F metal ion binding
2163 O_BomoBR101948_complete:A_BomoBR_DN29829_c0_g2_i6
931bp
 F-box_only_protein_11_isoform_X2_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006464 P cellular protein modification process
GO:0007605 P sensory perception of sound
GO:0008270 F zinc ion binding
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016567 P protein ubiquitination
GO:0035246 P peptidyl-arginine N-methylation
GO:0046872 F metal ion binding
2164 O_BomoBR101949_complete:A_BomoBR_DN29829_c0_g1_i2
553bp
 brefeldin_A-inhibited_guanine_nucleotide-exchange_protein_3_isoform_X1_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0010923 P negative regulation of phosphatase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030133 C transport vesicle
GO:0030658 C transport vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0032012 P regulation of ARF protein signal transduction
GO:0043547 P positive regulation of GTPase activity
2165 O_BomoBR10194_complete:A_BomoBR_DN31374_c5_g2_i1
199bp
 aubergine_protein_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0001556 P oocyte maturation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0006342 P heterochromatin assembly
GO:0006417 P regulation of translation
GO:0006446 P regulation of translational initiation
GO:0007076 P mitotic chromosome condensation
GO:0007275 P multicellular organism development
GO:0007279 P pole cell formation
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0007318 P pole plasm protein localization
GO:0010529 P negative regulation of transposition
GO:0016246 P RNA interference
GO:0030154 P cell differentiation
GO:0030423 P targeting of mRNA for destruction involved in RNA interference
GO:0030717 P oocyte karyosome formation
GO:0031047 P gene silencing by RNA
GO:0034584 F piRNA binding
GO:0035282 P segmentation
GO:0043186 C P granule
GO:0045089 P positive regulation of innate immune response
GO:0046011 P regulation of oskar mRNA translation
GO:0046012 P positive regulation of oskar mRNA translation
GO:0046594 P maintenance of pole plasm mRNA location
GO:0046843 P dorsal appendage formation
GO:0048477 P oogenesis
GO:0050829 P defense response to Gram-negative bacterium
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
2166 O_BomoBR101950_complete:A_BomoBR_DN29829_c0_g1_i2
146bp
2167 O_BomoBR101951_complete:A_BomoBR_DN29829_c0_g1_i2
100bp
2168 O_BomoBR101952_complete:A_BomoBR_DN29829_c0_g2_i8
848bp
 F-box_only_protein_11_isoform_X2_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006464 P cellular protein modification process
GO:0007605 P sensory perception of sound
GO:0008270 F zinc ion binding
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016567 P protein ubiquitination
GO:0035246 P peptidyl-arginine N-methylation
GO:0046872 F metal ion binding
2169 O_BomoBR101953_complete:A_BomoBR_DN29829_c0_g1_i3
187bp
 brefeldin_A-inhibited_guanine_nucleotide-exchange_protein_3_isoform_X1_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0010923 P negative regulation of phosphatase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030133 C transport vesicle
GO:0030658 C transport vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0032012 P regulation of ARF protein signal transduction
GO:0043547 P positive regulation of GTPase activity
2170 O_BomoBR101954_complete:A_BomoBR_DN29829_c0_g1_i3
143bp
2171 O_BomoBR101955_complete:A_BomoBR_DN29829_c0_g7_i1
100bp
 synaptotagmin-4_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005544 F calcium-dependent phospholipid binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006906 P vesicle fusion
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017158 P regulation of calcium ion-dependent exocytosis
GO:0019905 F syntaxin binding
GO:0030054 C cell junction
GO:0030276 F clathrin binding
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
GO:0046872 F metal ion binding
GO:0046929 P negative regulation of neurotransmitter secretion
GO:0048791 P calcium ion-regulated exocytosis of neurotransmitter
2172 O_BomoBR101956_complete:A_BomoBR_DN29829_c0_g2_i9
102bp
 F-box_only_protein_11_isoform_X2_[Bombyx_mori]
2173 O_BomoBR101957_complete:A_BomoBR_DN29829_c0_g2_i10
931bp
 F-box_only_protein_11_isoform_X2_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006464 P cellular protein modification process
GO:0007605 P sensory perception of sound
GO:0008270 F zinc ion binding
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016567 P protein ubiquitination
GO:0035246 P peptidyl-arginine N-methylation
GO:0046872 F metal ion binding
2174 O_BomoBR101958_5prime_partial:A_BomoBR_DN29829_c0_g1_i4
656bp
 brefeldin_A-inhibited_guanine_nucleotide-exchange_protein_3_isoform_X2_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0010923 P negative regulation of phosphatase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030133 C transport vesicle
GO:0030658 C transport vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0032012 P regulation of ARF protein signal transduction
GO:0043547 P positive regulation of GTPase activity
2175 O_BomoBR101959_complete:A_BomoBR_DN29829_c0_g1_i4
146bp
2176 O_BomoBR10195_complete:A_BomoBR_DN31374_c5_g1_i2
747bp
 ATP-dependent_RNA_helicase_DDX42_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
2177 O_BomoBR101960_complete:A_BomoBR_DN29829_c0_g1_i4
100bp
2178 O_BomoBR101961_complete:A_BomoBR_DN29829_c0_g2_i11
645bp
 F-box_only_protein_11_isoform_X2_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006464 P cellular protein modification process
GO:0007605 P sensory perception of sound
GO:0008270 F zinc ion binding
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016567 P protein ubiquitination
GO:0035246 P peptidyl-arginine N-methylation
GO:0046872 F metal ion binding
2179 O_BomoBR101962_complete:A_BomoBR_DN29829_c0_g2_i11
220bp
 F-box_only_protein_11_isoform_X2_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006464 P cellular protein modification process
GO:0007605 P sensory perception of sound
GO:0008270 F zinc ion binding
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016567 P protein ubiquitination
GO:0035246 P peptidyl-arginine N-methylation
GO:0046872 F metal ion binding
2180 O_BomoBR101963_complete:A_BomoBR_DN29829_c0_g2_i12
158bp
 F-box_only_protein_11_isoform_X2_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006464 P cellular protein modification process
GO:0007605 P sensory perception of sound
GO:0008270 F zinc ion binding
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016567 P protein ubiquitination
GO:0035246 P peptidyl-arginine N-methylation
GO:0046872 F metal ion binding
2181 O_BomoBR101964_complete:A_BomoBR_DN29829_c0_g2_i13
810bp
 F-box_only_protein_11_isoform_X1_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006464 P cellular protein modification process
GO:0007605 P sensory perception of sound
GO:0008270 F zinc ion binding
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016567 P protein ubiquitination
GO:0035246 P peptidyl-arginine N-methylation
GO:0046872 F metal ion binding
2182 O_BomoBR101965_complete:A_BomoBR_DN29829_c0_g2_i13
128bp
2183 O_BomoBR101966_complete:A_BomoBR_DN29829_c0_g2_i14
645bp
 F-box_only_protein_11_isoform_X2_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006464 P cellular protein modification process
GO:0007605 P sensory perception of sound
GO:0008270 F zinc ion binding
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016567 P protein ubiquitination
GO:0035246 P peptidyl-arginine N-methylation
GO:0046872 F metal ion binding
2184 O_BomoBR101967_complete:A_BomoBR_DN29829_c0_g2_i14
137bp
 F-box_only_protein_11_isoform_X1_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006464 P cellular protein modification process
GO:0007605 P sensory perception of sound
GO:0008270 F zinc ion binding
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016567 P protein ubiquitination
GO:0035246 P peptidyl-arginine N-methylation
GO:0046872 F metal ion binding
2185 O_BomoBR101968_complete:A_BomoBR_DN29829_c0_g2_i15
137bp
 F-box_only_protein_11_isoform_X1_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006464 P cellular protein modification process
GO:0007605 P sensory perception of sound
GO:0008270 F zinc ion binding
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016567 P protein ubiquitination
GO:0035246 P peptidyl-arginine N-methylation
GO:0046872 F metal ion binding
2186 O_BomoBR101969_complete:A_BomoBR_DN29829_c0_g1_i5
489bp
 brefeldin_A-inhibited_guanine_nucleotide-exchange_protein_3_isoform_X1_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0010923 P negative regulation of phosphatase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030133 C transport vesicle
GO:0030658 C transport vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0032012 P regulation of ARF protein signal transduction
GO:0043547 P positive regulation of GTPase activity
2187 O_BomoBR10196_complete:A_BomoBR_DN31374_c5_g1_i2
162bp
 hypothetical_protein_AX774_g2527,_partial_[Zancudomyces_culisetae]
2188 O_BomoBR101970_complete:A_BomoBR_DN29829_c0_g1_i5
100bp
2189 O_BomoBR101971_complete:A_BomoBR_DN29829_c0_g7_i4
228bp
 synaptotagmin-4_[Bombyx_mori]
GO:0000149 F SNARE binding
GO:0001786 F phosphatidylserine binding
GO:0005509 F calcium ion binding
GO:0005544 F calcium-dependent phospholipid binding
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006887 P exocytosis
GO:0006906 P vesicle fusion
GO:0007269 P neurotransmitter secretion
GO:0007420 P brain development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017158 P regulation of calcium ion-dependent exocytosis
GO:0019905 F syntaxin binding
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0030276 F clathrin binding
GO:0030672 C synaptic vesicle membrane
GO:0031045 C dense core granule
GO:0031339 P negative regulation of vesicle fusion
GO:0031410 C cytoplasmic vesicle
GO:0043005 C neuron projection
GO:0043231 C intracellular membrane-bounded organelle
GO:0045202 C synapse
GO:0045955 P negative regulation of calcium ion-dependent exocytosis
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048489 P synaptic vesicle transport
GO:0048791 P calcium ion-regulated exocytosis of neurotransmitter
GO:1903861 P positive regulation of dendrite extension
2190 O_BomoBR101972_3prime_partial:A_BomoBR_DN29829_c0_g10_i1
695bp
 prestin_isoform_X2_[Bombyx_mori]
GO:0002931 P response to ischemia
GO:0005254 F chloride channel activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007605 P sensory perception of sound
GO:0008134 F transcription factor binding
GO:0008271 F secondary active sulfate transmembrane transporter activity
GO:0008272 P sulfate transport
GO:0008360 P regulation of cell shape
GO:0009751 P response to salicylic acid
GO:0010996 P response to auditory stimulus
GO:0015106 F bicarbonate transmembrane transporter activity
GO:0015116 F sulfate transmembrane transporter activity
GO:0015301 F anion:anion antiporter activity
GO:0015701 P bicarbonate transport
GO:0015755 P fructose transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0016328 C lateral plasma membrane
GO:0019531 F oxalate transmembrane transporter activity
GO:0019532 P oxalate transport
GO:0030507 F spectrin binding
GO:0034220 P ion transmembrane transport
GO:0034766 P negative regulation of ion transmembrane transport
GO:0035864 P response to potassium ion
GO:0042391 P regulation of membrane potential
GO:0042493 P response to xenobiotic stimulus
GO:0042803 F protein homodimerization activity
GO:0045793 P positive regulation of cell size
GO:0051262 P protein tetramerization
GO:0051453 P regulation of intracellular pH
GO:0055085 P transmembrane transport
GO:0090102 P cochlea development
GO:0097066 P response to thyroid hormone
GO:0098656 P anion transmembrane transport
GO:1902074 P response to salt
GO:1902358 P sulfate transmembrane transport
GO:1902476 P chloride transmembrane transport
GO:2000147 P positive regulation of cell motility
previous next from show/103968

- SilkBase 1999-2023 -