Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
2131	O_BomoBR101919_complete:A_BomoBR_DN29879_c0_g1_i7 179bp	Bomo_Chr16	Serum_response_factor-binding_protein_1_[Folsomia_candida]
2132	O_BomoBR10191_complete:A_BomoBR_DN31340_c2_g3_i4 340bp	Bomo_Chr10	polymerase_delta_interacting_protein_3_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000346 C transcription export complex GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0006369 P termination of RNA polymerase II transcription GO:0006405 P RNA export from nucleus GO:0006406 P mRNA export from nucleus GO:0006417 P regulation of translation GO:0006810 P transport GO:0016607 C nuclear speck GO:0016973 P poly(A)+ mRNA export from nucleus GO:0031124 P mRNA 3'-end processing GO:0035145 C exon-exon junction complex GO:0043231 C intracellular membrane-bounded organelle GO:0044822 F RNA binding GO:0045727 P positive regulation of translation GO:0051028 P mRNA transport
2133	O_BomoBR101920_3prime_partial:A_BomoBR_DN29879_c0_g1_i7 123bp	Bomo_Chr16	PREDICTED:_uncharacterized_protein_LOC106717337_[Papilio_machaon]
2134	O_BomoBR101921_complete:A_BomoBR_DN29805_c7_g1_i1 450bp	Bomo_Chr14	tetratricopeptide_repeat_protein_5_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003682 F chromatin binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0006281 P DNA repair GO:0006974 P cellular response to DNA damage stimulus GO:0045944 P positive regulation of transcription by RNA polymerase II GO:1901796 P regulation of signal transduction by p53 class mediator
2135	O_BomoBR101922_complete:A_BomoBR_DN29805_c7_g1_i1 119bp	Bomo_Chr14
2136	O_BomoBR101923_5prime_partial:A_BomoBR_DN29805_c7_g10_i1 137bp	Bomo_Chr10
2137	O_BomoBR101924_5prime_partial:A_BomoBR_DN29805_c7_g10_i1 107bp	Bomo_Chr10	ATP-binding_cassette_sub-family_C_member_Sur_isoform_X2_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0005515 F protein binding GO:0005524 F ATP binding GO:0005886 C plasma membrane GO:0006810 P transport GO:0008152 P metabolic process GO:0008361 P regulation of cell size GO:0009637 P response to blue light GO:0009639 P response to red or far red light GO:0009640 P photomorphogenesis GO:0009733 P response to auxin GO:0009734 P auxin-activated signaling pathway GO:0009926 P auxin polar transport GO:0009958 P positive gravitropism GO:0010160 P formation of animal organ boundary GO:0010218 P response to far red light GO:0010315 P auxin efflux GO:0010329 F auxin efflux transmembrane transporter activity GO:0010540 P basipetal auxin transport GO:0010541 P acropetal auxin transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016887 F ATP hydrolysis activity GO:0042626 F ATPase-coupled transmembrane transporter activity GO:0043481 P anthocyanin accumulation in tissues in response to UV light GO:0048364 P root development GO:0048443 P stamen development GO:0048527 P lateral root development GO:0055085 P transmembrane transport GO:0060918 P auxin transport
2138	O_BomoBR101925_3prime_partial:A_BomoBR_DN29895_c2_g1_i1 346bp	Bomo_Chr10	serine/threonine-protein_kinase_Aurora-2_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000212 P meiotic spindle organization GO:0000226 P microtubule cytoskeleton organization GO:0000278 P mitotic cell cycle GO:0000922 C spindle pole GO:0004672 F protein kinase activity GO:0004674 F protein serine/threonine kinase activity GO:0005524 F ATP binding GO:0005737 C cytoplasm GO:0005813 C centrosome GO:0005815 C microtubule organizing center GO:0005819 C spindle GO:0005856 C cytoskeleton GO:0005874 C microtubule GO:0005876 C spindle microtubule GO:0006468 P protein phosphorylation GO:0007049 P cell cycle GO:0007052 P mitotic spindle organization GO:0007067 P mitotic cell cycle GO:0007100 P mitotic centrosome separation GO:0008017 F microtubule binding GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity GO:0018105 P peptidyl-serine phosphorylation GO:0019894 F kinesin binding GO:0046777 P protein autophosphorylation GO:0051297 P centrosome cycle GO:0051301 P cell division GO:0051321 P meiotic cell cycle GO:0090307 P mitotic spindle assembly
2139	O_BomoBR101926_complete:A_BomoBR_DN29895_c10_g3_i1 111bp	Bomo_Chr22	protein_FAM32A-like_[Bombyx_mori]	GO:0005634 C nucleus GO:0005730 C nucleolus GO:0006915 P apoptotic process GO:0007049 P cell cycle
2140	O_BomoBR101927_complete:A_BomoBR_DN29895_c10_g3_i2 111bp	Bomo_Chr22	protein_FAM32A-like_[Bombyx_mori]	GO:0005634 C nucleus GO:0005730 C nucleolus GO:0006915 P apoptotic process GO:0007049 P cell cycle
2141	O_BomoBR101928_5prime_partial:A_BomoBR_DN29895_c12_g1_i1 1169bp	Bomo_Chr23	LOW_QUALITY_PROTEIN:_PHD_and_RING_finger_domain-containing_protein_1_[Bombyx_mori]	GO:0003723 F RNA binding GO:0005634 C nucleus GO:0006366 P transcription by RNA polymerase II GO:0006397 P mRNA processing GO:0008380 P RNA splicing GO:0019904 F protein domain specific binding
2142	O_BomoBR101929_complete:A_BomoBR_DN29895_c12_g1_i1 383bp	Bomo_Chr23	LOW_QUALITY_PROTEIN:_PHD_and_RING_finger_domain-containing_protein_1_[Bombyx_mori]
2143	O_BomoBR10192_complete:A_BomoBR_DN31340_c2_g3_i5 264bp	Bomo_Chr10	polymerase_delta_interacting_protein_3_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000346 C transcription export complex GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0006417 P regulation of translation GO:0006810 P transport GO:0016607 C nuclear speck GO:0016973 P poly(A)+ mRNA export from nucleus GO:0035145 C exon-exon junction complex GO:0043231 C intracellular membrane-bounded organelle GO:0044822 F RNA binding GO:0045727 P positive regulation of translation GO:0051028 P mRNA transport
2144	O_BomoBR101930_complete:A_BomoBR_DN29895_c12_g1_i1 296bp	Bomo_Chr23
2145	O_BomoBR101931_complete:A_BomoBR_DN29895_c12_g1_i1 259bp	Bomo_Chr23
2146	O_BomoBR101932_5prime_partial:A_BomoBR_DN29895_c12_g1_i1 121bp	Bomo_Chr23
2147	O_BomoBR101933_complete:A_BomoBR_DN29895_c12_g1_i4 258bp	Bomo_Chr23	LOW_QUALITY_PROTEIN:_PHD_and_RING_finger_domain-containing_protein_1_[Bombyx_mori]	GO:0006366 P transcription by RNA polymerase II GO:0006397 P mRNA processing GO:0008270 F zinc ion binding GO:0016020 C membrane GO:0019904 F protein domain specific binding GO:0046872 F metal ion binding GO:0070063 F RNA polymerase binding
2148	O_BomoBR101934_complete:A_BomoBR_DN29895_c12_g1_i4 127bp	Bomo_Chr23
2149	O_BomoBR101935_5prime_partial:A_BomoBR_DN29895_c12_g1_i5 915bp	Bomo_Chr23	LOW_QUALITY_PROTEIN:_PHD_and_RING_finger_domain-containing_protein_1_[Bombyx_mori]
2150	O_BomoBR101936_complete:A_BomoBR_DN29895_c12_g1_i5 383bp	Bomo_Chr23	LOW_QUALITY_PROTEIN:_PHD_and_RING_finger_domain-containing_protein_1_[Bombyx_mori]
2151	O_BomoBR101937_complete:A_BomoBR_DN29895_c12_g1_i5 259bp	Bomo_Chr23
2152	O_BomoBR101938_complete:A_BomoBR_DN29895_c12_g1_i5 172bp	Bomo_Chr23
2153	O_BomoBR101939_5prime_partial:A_BomoBR_DN29895_c12_g1_i5 121bp	Bomo_Chr23
2154	O_BomoBR10193_5prime_partial:A_BomoBR_DN31340_c2_g1_i11 105bp	Bomo_Chr28	PREDICTED:_uncharacterized_protein_LOC106130270_[Amyelois_transitella]
2155	O_BomoBR101940_complete:A_BomoBR_DN29829_c0_g1_i1 646bp	Bomo_Chr3	brefeldin_A-inhibited_guanine_nucleotide-exchange_protein_3_isoform_X1_[Bombyx_mori]	GO:0005085 F guanyl-nucleotide exchange factor activity GO:0005086 F guanyl-nucleotide exchange factor activity GO:0005737 C cytoplasm GO:0010923 P negative regulation of phosphatase activity GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0030133 C transport vesicle GO:0030658 C transport vesicle membrane GO:0031410 C cytoplasmic vesicle GO:0032012 P regulation of ARF protein signal transduction GO:0043547 P positive regulation of GTPase activity
2156	O_BomoBR101941_complete:A_BomoBR_DN29829_c0_g1_i1 146bp	Bomo_Chr3
2157	O_BomoBR101942_complete:A_BomoBR_DN29829_c0_g1_i1 100bp	Bomo_Chr3
2158	O_BomoBR101943_complete:A_BomoBR_DN29829_c0_g2_i1 931bp	Bomo_Chr25	F-box_only_protein_11_isoform_X2_[Bombyx_mori]	GO:0000151 C ubiquitin ligase complex GO:0004842 F ubiquitin-protein transferase activity GO:0005634 C nucleus GO:0005694 C chromosome GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0006464 P cellular protein modification process GO:0007605 P sensory perception of sound GO:0008270 F zinc ion binding GO:0016274 F protein-arginine N-methyltransferase activity GO:0016567 P protein ubiquitination GO:0035246 P peptidyl-arginine N-methylation GO:0046872 F metal ion binding
2159	O_BomoBR101944_complete:A_BomoBR_DN29829_c0_g2_i2 645bp	Bomo_Chr25	F-box_only_protein_11_isoform_X2_[Bombyx_mori]	GO:0000151 C ubiquitin ligase complex GO:0004842 F ubiquitin-protein transferase activity GO:0005634 C nucleus GO:0005694 C chromosome GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0006464 P cellular protein modification process GO:0007605 P sensory perception of sound GO:0008270 F zinc ion binding GO:0016274 F protein-arginine N-methyltransferase activity GO:0016567 P protein ubiquitination GO:0035246 P peptidyl-arginine N-methylation GO:0046872 F metal ion binding
2160	O_BomoBR101945_complete:A_BomoBR_DN29829_c0_g2_i2 220bp	Bomo_Chr25	F-box_only_protein_11_isoform_X2_[Bombyx_mori]	GO:0000151 C ubiquitin ligase complex GO:0004842 F ubiquitin-protein transferase activity GO:0005634 C nucleus GO:0005694 C chromosome GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0006464 P cellular protein modification process GO:0007605 P sensory perception of sound GO:0008270 F zinc ion binding GO:0016274 F protein-arginine N-methyltransferase activity GO:0016567 P protein ubiquitination GO:0035246 P peptidyl-arginine N-methylation GO:0046872 F metal ion binding