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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4591 O_BomoOtmSK14132_complete:A_BomoOtmSK_comp14865_c0_seq5
130bp
4592 O_BomoOtmSK14133_complete:A_BomoOtmSK_comp14866_c0_seq2
713bp
 zinc_finger_protein_Xfin_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
4593 O_BomoOtmSK14134_5prime_partial:A_BomoOtmSK_comp14866_c0_seq3
1663bp
 zinc_finger_protein_Xfin_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070895 P negative regulation of transposon integration
4594 O_BomoOtmSK14135_5prime_partial:A_BomoOtmSK_comp14866_c0_seq4
1406bp
 zinc_finger_protein_Xfin_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070895 P negative regulation of transposon integration
4595 O_BomoOtmSK14136_complete:A_BomoOtmSK_comp14867_c0_seq1
1276bp
 tetratricopeptide_repeat_protein_37_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0035327 C euchromatin
GO:0055087 C Ski complex
4596 O_BomoOtmSK14137_complete:A_BomoOtmSK_comp14867_c0_seq1
237bp
 tRNA_(guanine-N(7)-)-methyltransferase_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006400 P tRNA modification
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0008176 F tRNA (guanine-N7-)-methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
GO:0036265 P RNA (guanine-N7)-methylation
4597 O_BomoOtmSK14138_complete:A_BomoOtmSK_comp14867_c0_seq2
1276bp
 tetratricopeptide_repeat_protein_37_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0035327 C euchromatin
GO:0055087 C Ski complex
4598 O_BomoOtmSK14139_complete:A_BomoOtmSK_comp14867_c0_seq2
237bp
 tRNA_(guanine-N(7)-)-methyltransferase_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006400 P tRNA modification
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0008176 F tRNA (guanine-N7-)-methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
GO:0036265 P RNA (guanine-N7)-methylation
4599 O_BomoOtmSK1413_complete:A_BomoOtmSK_comp4966_c0_seq2
240bp
 LOW_QUALITY_PROTEIN:_CDP-diacylglycerol--glycerol-3-phosphate_3-phosphatidyltransferase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005509 F calcium ion binding
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005783 C endoplasmic reticulum
GO:0006629 P lipid metabolic process
GO:0006655 P phosphatidylglycerol biosynthetic process
GO:0008444 F CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
GO:0008654 P phospholipid biosynthetic process
GO:0016740 F transferase activity
GO:0016780 F phosphotransferase activity, for other substituted phosphate groups
GO:0032049 P cardiolipin biosynthetic process
GO:0046339 P diacylglycerol metabolic process
4600 O_BomoOtmSK14140_complete:A_BomoOtmSK_comp14869_c0_seq2
322bp
 glutamate_receptor_Gr2_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0032469 P endoplasmic reticulum calcium ion homeostasis
GO:0044325 F transmembrane transporter binding
GO:1902236 P negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway
4601 O_BomoOtmSK14141_complete:A_BomoOtmSK_comp14869_c0_seq3
316bp
 glutamate_[NMDA]_receptor-associated_protein_1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0032469 P endoplasmic reticulum calcium ion homeostasis
GO:0044325 F transmembrane transporter binding
GO:1902236 P negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway
4602 O_BomoOtmSK14142_complete:A_BomoOtmSK_comp14869_c0_seq4
310bp
 glutamate_[NMDA]_receptor-associated_protein_1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0032469 P endoplasmic reticulum calcium ion homeostasis
GO:0044325 F transmembrane transporter binding
GO:1902236 P negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway
4603 O_BomoOtmSK14143_complete:A_BomoOtmSK_comp14870_c0_seq1
1068bp
 RNA_exonuclease_1_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
4604 O_BomoOtmSK14144_complete:A_BomoOtmSK_comp14872_c0_seq1
770bp
 serine/arginine_repetitive_matrix_protein_1_isoform_X4_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
4605 O_BomoOtmSK14145_complete:A_BomoOtmSK_comp14872_c0_seq1
250bp
4606 O_BomoOtmSK14146_complete:A_BomoOtmSK_comp14872_c0_seq1
129bp
4607 O_BomoOtmSK14147_complete:A_BomoOtmSK_comp14872_c0_seq2
852bp
 serine/arginine_repetitive_matrix_protein_1_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
4608 O_BomoOtmSK14148_complete:A_BomoOtmSK_comp14872_c0_seq2
250bp
4609 O_BomoOtmSK14149_complete:A_BomoOtmSK_comp14872_c0_seq2
129bp
4610 O_BomoOtmSK1414_complete:A_BomoOtmSK_comp4966_c0_seq2
203bp
 LOW_QUALITY_PROTEIN:_CDP-diacylglycerol--glycerol-3-phosphate_3-phosphatidyltransferase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0006629 P lipid metabolic process
GO:0006655 P phosphatidylglycerol biosynthetic process
GO:0008444 F CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
GO:0008654 P phospholipid biosynthetic process
GO:0016740 F transferase activity
GO:0016780 F phosphotransferase activity, for other substituted phosphate groups
4611 O_BomoOtmSK14150_complete:A_BomoOtmSK_comp14872_c0_seq3
770bp
 serine/arginine_repetitive_matrix_protein_1_isoform_X4_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
4612 O_BomoOtmSK14151_complete:A_BomoOtmSK_comp14872_c0_seq3
250bp
4613 O_BomoOtmSK14152_complete:A_BomoOtmSK_comp14872_c0_seq3
129bp
4614 O_BomoOtmSK14153_complete:A_BomoOtmSK_comp14872_c0_seq3
112bp
 serine/arginine_repetitive_matrix_protein_1_isoform_X1_[Bombyx_mori]
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005829 C cytosol
GO:0006369 P termination of RNA polymerase II transcription
GO:0006397 P mRNA processing
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0008380 P RNA splicing
GO:0016363 C nuclear matrix
GO:0016607 C nuclear speck
GO:0031124 P mRNA 3'-end processing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
4615 O_BomoOtmSK14154_complete:A_BomoOtmSK_comp14872_c0_seq4
770bp
 serine/arginine_repetitive_matrix_protein_1_isoform_X4_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
4616 O_BomoOtmSK14155_complete:A_BomoOtmSK_comp14872_c0_seq4
250bp
4617 O_BomoOtmSK14156_complete:A_BomoOtmSK_comp14872_c0_seq4
129bp
4618 O_BomoOtmSK14157_complete:A_BomoOtmSK_comp14872_c0_seq4
112bp
 serine/arginine_repetitive_matrix_protein_1_isoform_X1_[Bombyx_mori]
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005829 C cytosol
GO:0006369 P termination of RNA polymerase II transcription
GO:0006397 P mRNA processing
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0008380 P RNA splicing
GO:0016363 C nuclear matrix
GO:0016607 C nuclear speck
GO:0031124 P mRNA 3'-end processing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
4619 O_BomoOtmSK14158_complete:A_BomoOtmSK_comp14872_c0_seq5
770bp
 serine/arginine_repetitive_matrix_protein_1_isoform_X4_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
4620 O_BomoOtmSK14159_complete:A_BomoOtmSK_comp14872_c0_seq5
250bp
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