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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4621 O_BomoOtmSK1415_5prime_partial:A_BomoOtmSK_comp4967_c0_seq1
485bp
 spatzle-like_protein_isoform_X1_[Bombyx_mori]
4622 O_BomoOtmSK14160_complete:A_BomoOtmSK_comp14872_c0_seq5
129bp
4623 O_BomoOtmSK14161_3prime_partial:A_BomoOtmSK_comp14873_c0_seq1
214bp
 uncharacterized_protein_LOC101741382_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0021554 P optic nerve development
4624 O_BomoOtmSK14162_complete:A_BomoOtmSK_comp14874_c0_seq1
214bp
 cuticular_protein_RR-1_motif_40_precursor_[Bombyx_mori]
GO:0042302 F structural constituent of cuticle
4625 O_BomoOtmSK14163_complete:A_BomoOtmSK_comp14876_c0_seq1
326bp
 cyclin-H_[Bombyx_mori]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005675 C transcription factor TFIIH holo complex
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006294 P nucleotide-excision repair, preincision complex assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006361 P transcription initiation from RNA polymerase I promoter
GO:0006362 P transcription elongation from RNA polymerase I promoter
GO:0006363 P termination of RNA polymerase I transcription
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0006370 P 7-methylguanosine mRNA capping
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016538 F cyclin-dependent protein serine/threonine kinase regulator activity
GO:0019907 C cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0045737 P positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0070985 C transcription factor TFIIK complex
GO:1901409 P positive regulation of phosphorylation of RNA polymerase II C-terminal domain
4626 O_BomoOtmSK14164_complete:A_BomoOtmSK_comp14876_c0_seq2
326bp
 cyclin-H_[Bombyx_mori]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005675 C transcription factor TFIIH holo complex
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006294 P nucleotide-excision repair, preincision complex assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006361 P transcription initiation from RNA polymerase I promoter
GO:0006362 P transcription elongation from RNA polymerase I promoter
GO:0006363 P termination of RNA polymerase I transcription
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0006370 P 7-methylguanosine mRNA capping
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016538 F cyclin-dependent protein serine/threonine kinase regulator activity
GO:0019907 C cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0045737 P positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0070985 C transcription factor TFIIK complex
GO:1901409 P positive regulation of phosphorylation of RNA polymerase II C-terminal domain
4627 O_BomoOtmSK14165_complete:A_BomoOtmSK_comp14877_c0_seq1
383bp
 AN1-type_zinc_finger_protein_4_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
4628 O_BomoOtmSK14166_complete:A_BomoOtmSK_comp14877_c0_seq1
121bp
4629 O_BomoOtmSK14167_3prime_partial:A_BomoOtmSK_comp14877_c0_seq2
266bp
 AN1-type_zinc_finger_protein_4_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
4630 O_BomoOtmSK14168_complete:A_BomoOtmSK_comp14877_c0_seq3
121bp
4631 O_BomoOtmSK14169_complete:A_BomoOtmSK_comp14878_c0_seq1
193bp
 actin-binding_Rho-activating_protein_[Bombyx_mori]
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0015031 P protein transport
GO:0015629 C actin cytoskeleton
GO:0030016 C myofibril
GO:0030017 C sarcomere
GO:0035025 P positive regulation of Rho protein signal transduction
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051091 P positive regulation of DNA-binding transcription factor activity
4632 O_BomoOtmSK1416_complete:A_BomoOtmSK_comp4967_c0_seq1
228bp
4633 O_BomoOtmSK14170_complete:A_BomoOtmSK_comp14880_c0_seq1
462bp
 CBP80/20-dependent_translation_initiation_factor_isoform_X1_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006417 P regulation of translation
GO:0006446 P regulation of translational initiation
GO:0048471 C perinuclear region of cytoplasm
4634 O_BomoOtmSK14171_complete:A_BomoOtmSK_comp14880_c0_seq1
150bp
4635 O_BomoOtmSK14172_complete:A_BomoOtmSK_comp14880_c0_seq2
458bp
 CBP80/20-dependent_translation_initiation_factor_isoform_X2_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006417 P regulation of translation
GO:0006446 P regulation of translational initiation
GO:0048471 C perinuclear region of cytoplasm
4636 O_BomoOtmSK14173_complete:A_BomoOtmSK_comp14880_c0_seq2
150bp
4637 O_BomoOtmSK14174_complete:A_BomoOtmSK_comp14880_c0_seq3
351bp
 CBP80/20-dependent_translation_initiation_factor_isoform_X4_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0006417 P regulation of translation
GO:0006446 P regulation of translational initiation
GO:0048471 C perinuclear region of cytoplasm
4638 O_BomoOtmSK14175_complete:A_BomoOtmSK_comp14880_c0_seq3
150bp
4639 O_BomoOtmSK14176_complete:A_BomoOtmSK_comp14882_c0_seq1
255bp
 glutathione_S-transferase_omega_1_[Bombyx_mori]
GO:0004364 F glutathione transferase activity
GO:0004734 F pyrimidodiazepine synthase activity
GO:0005737 C cytoplasm
GO:0006726 P eye pigment biosynthetic process
GO:0006728 P pteridine biosynthetic process
GO:0006749 P glutathione metabolic process
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0016782 F transferase activity, transferring sulphur-containing groups
GO:0042803 F protein homodimerization activity
GO:0045174 F glutathione dehydrogenase (ascorbate) activity
GO:0055114 P obsolete oxidation-reduction process
GO:0098869 P cellular oxidant detoxification
4640 O_BomoOtmSK14177_complete:A_BomoOtmSK_comp14886_c0_seq1
303bp
 coatomer_protein_complex_subunit_epsilon_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005198 F structural molecule activity
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030126 C COPI vesicle coat
GO:0030137 C COPI-coated vesicle
GO:0030663 C COPI-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
4641 O_BomoOtmSK14178_complete:A_BomoOtmSK_comp14887_c0_seq1
208bp
 uncharacterized_protein_LOC101742918_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
4642 O_BomoOtmSK14179_3prime_partial:A_BomoOtmSK_comp14889_c0_seq1
408bp
 FH1/FH2_domain-containing_protein_3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005865 C striated muscle thin filament
GO:0007015 P actin filament organization
GO:0030017 C sarcomere
GO:0030018 C Z disc
GO:0030837 P negative regulation of actin filament polymerization
GO:0045214 P sarcomere organization
GO:0051639 P actin filament network formation
GO:0055003 P cardiac myofibril assembly
4643 O_BomoOtmSK1417_complete:A_BomoOtmSK_comp4967_c0_seq1
106bp
4644 O_BomoOtmSK14180_complete:A_BomoOtmSK_comp14889_c0_seq2
1108bp
 PREDICTED:_uncharacterized_protein_LOC106717236_isoform_X2_[Papilio_machaon]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0007015 P actin filament organization
GO:0030017 C sarcomere
GO:0030018 C Z disc
GO:0030837 P negative regulation of actin filament polymerization
GO:0045214 P sarcomere organization
GO:0051639 P actin filament network formation
GO:0055003 P cardiac myofibril assembly
4645 O_BomoOtmSK14181_complete:A_BomoOtmSK_comp14889_c0_seq2
317bp
4646 O_BomoOtmSK14182_5prime_partial:A_BomoOtmSK_comp14889_c0_seq3
1389bp
 PREDICTED:_uncharacterized_protein_LOC106717236_isoform_X2_[Papilio_machaon]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0007015 P actin filament organization
GO:0030017 C sarcomere
GO:0030018 C Z disc
GO:0030837 P negative regulation of actin filament polymerization
GO:0045214 P sarcomere organization
GO:0051639 P actin filament network formation
GO:0055003 P cardiac myofibril assembly
4647 O_BomoOtmSK14183_complete:A_BomoOtmSK_comp14889_c0_seq3
317bp
4648 O_BomoOtmSK14184_3prime_partial:A_BomoOtmSK_comp14889_c0_seq4
408bp
 FH1/FH2_domain-containing_protein_3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005865 C striated muscle thin filament
GO:0007015 P actin filament organization
GO:0030017 C sarcomere
GO:0030018 C Z disc
GO:0030837 P negative regulation of actin filament polymerization
GO:0045214 P sarcomere organization
GO:0051639 P actin filament network formation
GO:0055003 P cardiac myofibril assembly
4649 O_BomoOtmSK14185_internal:A_BomoOtmSK_comp14889_c0_seq5
123bp
 FH1/FH2_domain-containing_protein_3_[Bombyx_mori]
4650 O_BomoOtmSK14186_complete:A_BomoOtmSK_comp14889_c0_seq6
1108bp
 PREDICTED:_uncharacterized_protein_LOC106717236_isoform_X2_[Papilio_machaon]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0007015 P actin filament organization
GO:0030017 C sarcomere
GO:0030018 C Z disc
GO:0030837 P negative regulation of actin filament polymerization
GO:0045214 P sarcomere organization
GO:0051639 P actin filament network formation
GO:0055003 P cardiac myofibril assembly
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