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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4561 O_BomoOtmSK14105_complete:A_BomoOtmSK_comp14857_c0_seq2
102bp
4562 O_BomoOtmSK14106_complete:A_BomoOtmSK_comp14857_c0_seq3
636bp
 protein_grainyhead_isoform_X1_[Bombyx_mori]
GO:0003382 P epithelial cell morphogenesis
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007009 P plasma membrane organization
GO:0007399 P nervous system development
GO:0007402 P ganglion mother cell fate determination
GO:0007419 P ventral cord development
GO:0007424 P open tracheal system development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007428 P primary branching, open tracheal system
GO:0007464 P R3/R4 cell fate commitment
GO:0008360 P regulation of cell shape
GO:0008362 P chitin-based embryonic cuticle biosynthetic process
GO:0035152 P regulation of tube architecture, open tracheal system
GO:0035159 P regulation of tube length, open tracheal system
GO:0040003 P chitin-based cuticle development
GO:0042052 P rhabdomere development
GO:0042127 P regulation of cell population proliferation
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0061024 P membrane organization
GO:0061041 P regulation of wound healing
4563 O_BomoOtmSK14107_complete:A_BomoOtmSK_comp14857_c0_seq3
102bp
4564 O_BomoOtmSK14108_complete:A_BomoOtmSK_comp14857_c0_seq4
923bp
 protein_grainyhead_isoform_X1_[Bombyx_mori]
GO:0003382 P epithelial cell morphogenesis
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007009 P plasma membrane organization
GO:0007399 P nervous system development
GO:0007402 P ganglion mother cell fate determination
GO:0007419 P ventral cord development
GO:0007424 P open tracheal system development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007428 P primary branching, open tracheal system
GO:0007464 P R3/R4 cell fate commitment
GO:0008360 P regulation of cell shape
GO:0008362 P chitin-based embryonic cuticle biosynthetic process
GO:0035152 P regulation of tube architecture, open tracheal system
GO:0035159 P regulation of tube length, open tracheal system
GO:0040003 P chitin-based cuticle development
GO:0042052 P rhabdomere development
GO:0042127 P regulation of cell population proliferation
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0061024 P membrane organization
GO:0061041 P regulation of wound healing
4565 O_BomoOtmSK14109_complete:A_BomoOtmSK_comp14857_c0_seq4
102bp
4566 O_BomoOtmSK1410_5prime_partial:A_BomoOtmSK_comp4959_c0_seq2
117bp
4567 O_BomoOtmSK14110_5prime_partial:A_BomoOtmSK_comp14859_c2_seq1
458bp
 equilibrative_nucleoside_transporter_4_[Bombyx_mori]
GO:0005337 F nucleoside transmembrane transporter activity
GO:0006810 P transport
GO:0008504 F monoamine transmembrane transporter activity
GO:0015844 P monoamine transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
GO:1901642 P nucleoside transmembrane transport
4568 O_BomoOtmSK14111_complete:A_BomoOtmSK_comp14859_c2_seq1
119bp
4569 O_BomoOtmSK14112_complete:A_BomoOtmSK_comp14859_c2_seq2
443bp
 equilibrative_nucleoside_transporter_4_[Bombyx_mori]
GO:0005337 F nucleoside transmembrane transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008504 F monoamine transmembrane transporter activity
GO:0015844 P monoamine transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0055085 P transmembrane transport
GO:1901642 P nucleoside transmembrane transport
4570 O_BomoOtmSK14113_complete:A_BomoOtmSK_comp14859_c2_seq2
119bp
4571 O_BomoOtmSK14114_internal:A_BomoOtmSK_comp14859_c2_seq3
325bp
 equilibrative_nucleoside_transporter_4_[Bombyx_mori]
GO:0005337 F nucleoside transmembrane transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008504 F monoamine transmembrane transporter activity
GO:0015844 P monoamine transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0055085 P transmembrane transport
GO:1901642 P nucleoside transmembrane transport
4572 O_BomoOtmSK14115_complete:A_BomoOtmSK_comp14859_c2_seq3
119bp
4573 O_BomoOtmSK14116_3prime_partial:A_BomoOtmSK_comp14859_c2_seq4
310bp
 equilibrative_nucleoside_transporter_4_[Bombyx_mori]
GO:0005337 F nucleoside transmembrane transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008504 F monoamine transmembrane transporter activity
GO:0015844 P monoamine transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0055085 P transmembrane transport
GO:1901642 P nucleoside transmembrane transport
4574 O_BomoOtmSK14117_complete:A_BomoOtmSK_comp14859_c2_seq4
119bp
4575 O_BomoOtmSK14118_complete:A_BomoOtmSK_comp14860_c0_seq1
178bp
 PREDICTED:_protein_lin-49,_partial_[Amyelois_transitella]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0043966 P histone H3 acetylation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070776 C MOZ/MORF histone acetyltransferase complex
GO:1901796 P regulation of signal transduction by p53 class mediator
4576 O_BomoOtmSK14119_complete:A_BomoOtmSK_comp14861_c0_seq1
397bp
 putative_acetyl_transferase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0003988 F acetyl-CoA C-acyltransferase activity
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006695 P cholesterol biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016747 F acyltransferase activity, transferring groups other than amino-acyl groups
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0071456 P cellular response to hypoxia
GO:1901029 P negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway
GO:1902109 P negative regulation of mitochondrial membrane permeability involved in apoptotic process
4577 O_BomoOtmSK1411_internal:A_BomoOtmSK_comp4961_c0_seq1
111bp
 pol_protein_[Danaus_plexippus_plexippus]
4578 O_BomoOtmSK14120_complete:A_BomoOtmSK_comp14862_c0_seq2
145bp
 ubiquitin-conjugating_enzyme_E2_variant_2_[Bombyx_mori]
GO:0000729 P DNA double-strand break processing
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006301 P postreplication repair
GO:0010976 P positive regulation of neuron projection development
GO:0031372 C UBC13-MMS2 complex
GO:0031625 F ubiquitin protein ligase binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0042275 P error-free postreplication DNA repair
GO:0043524 P negative regulation of neuron apoptotic process
GO:0045739 P positive regulation of DNA repair
GO:0051965 P positive regulation of synapse assembly
GO:0061630 F ubiquitin protein ligase activity
GO:0061631 F ubiquitin conjugating enzyme activity
GO:0070062 C extracellular exosome
GO:0070534 P protein K63-linked ubiquitination
4579 O_BomoOtmSK14121_5prime_partial:A_BomoOtmSK_comp14863_c0_seq1
219bp
 uncharacterized_protein_LOC101741620_isoform_X3_[Bombyx_mori]
4580 O_BomoOtmSK14122_5prime_partial:A_BomoOtmSK_comp14863_c0_seq2
227bp
 uncharacterized_protein_LOC101741620_isoform_X1_[Bombyx_mori]
4581 O_BomoOtmSK14123_internal:A_BomoOtmSK_comp14863_c0_seq3
216bp
 uncharacterized_protein_LOC101741620_isoform_X2_[Bombyx_mori]
4582 O_BomoOtmSK14124_complete:A_BomoOtmSK_comp14864_c0_seq1
482bp
 uncharacterized_protein_LOC101745497_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007275 P multicellular organism development
GO:0007423 P sensory organ development
GO:0007601 P visual perception
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0045676 P regulation of R7 cell differentiation
GO:0046872 F metal ion binding
GO:0050896 P response to stimulus
4583 O_BomoOtmSK14125_complete:A_BomoOtmSK_comp14864_c0_seq2
121bp
 uncharacterized_protein_LOC101745497_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007275 P multicellular organism development
GO:0007423 P sensory organ development
GO:0007601 P visual perception
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0045676 P regulation of R7 cell differentiation
GO:0046872 F metal ion binding
GO:0050896 P response to stimulus
4584 O_BomoOtmSK14126_complete:A_BomoOtmSK_comp14864_c0_seq3
121bp
 uncharacterized_protein_LOC101745497_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007275 P multicellular organism development
GO:0007423 P sensory organ development
GO:0007601 P visual perception
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0045676 P regulation of R7 cell differentiation
GO:0046872 F metal ion binding
GO:0050896 P response to stimulus
4585 O_BomoOtmSK14127_complete:A_BomoOtmSK_comp14864_c0_seq4
482bp
 uncharacterized_protein_LOC101745497_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007275 P multicellular organism development
GO:0007423 P sensory organ development
GO:0007601 P visual perception
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0045676 P regulation of R7 cell differentiation
GO:0046872 F metal ion binding
GO:0050896 P response to stimulus
4586 O_BomoOtmSK14128_internal:A_BomoOtmSK_comp14865_c0_seq2
137bp
4587 O_BomoOtmSK14129_5prime_partial:A_BomoOtmSK_comp14865_c0_seq2
137bp
4588 O_BomoOtmSK1412_complete:A_BomoOtmSK_comp4966_c0_seq1
461bp
 LOW_QUALITY_PROTEIN:_CDP-diacylglycerol--glycerol-3-phosphate_3-phosphatidyltransferase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0006629 P lipid metabolic process
GO:0006655 P phosphatidylglycerol biosynthetic process
GO:0008444 F CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
GO:0008654 P phospholipid biosynthetic process
GO:0016740 F transferase activity
GO:0016780 F phosphotransferase activity, for other substituted phosphate groups
4589 O_BomoOtmSK14130_5prime_partial:A_BomoOtmSK_comp14865_c0_seq5
193bp
4590 O_BomoOtmSK14131_5prime_partial:A_BomoOtmSK_comp14865_c0_seq5
138bp
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