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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3781 O_BomoOtmSK13403_3prime_partial:A_BomoOtmSK_comp14638_c1_seq1
526bp
 PREDICTED:_RNA-binding_protein_fusilli_isoform_X1_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0008380 P RNA splicing
GO:0043484 P regulation of RNA splicing
3782 O_BomoOtmSK13404_complete:A_BomoOtmSK_comp14638_c1_seq1
149bp
3783 O_BomoOtmSK13405_5prime_partial:A_BomoOtmSK_comp14638_c1_seq2
131bp
 RNA-binding_protein_fusilli_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0008380 P RNA splicing
GO:0043484 P regulation of RNA splicing
3784 O_BomoOtmSK13406_3prime_partial:A_BomoOtmSK_comp14638_c1_seq3
249bp
 RNA-binding_protein_fusilli_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0008380 P RNA splicing
GO:0043484 P regulation of RNA splicing
3785 O_BomoOtmSK13407_complete:A_BomoOtmSK_comp14638_c1_seq3
125bp
3786 O_BomoOtmSK13408_complete:A_BomoOtmSK_comp14639_c0_seq1
1082bp
 protein_diaphanous_isoform_X3_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007283 P spermatogenesis
GO:0016043 P cellular component organization
GO:0017048 F small GTPase binding
GO:0030036 P actin cytoskeleton organization
3787 O_BomoOtmSK13409_complete:A_BomoOtmSK_comp14639_c0_seq1
164bp
3788 O_BomoOtmSK1340_complete:A_BomoOtmSK_comp4877_c0_seq1
101bp
3789 O_BomoOtmSK13410_complete:A_BomoOtmSK_comp14639_c0_seq1
127bp
3790 O_BomoOtmSK13411_complete:A_BomoOtmSK_comp14639_c0_seq2
1083bp
 protein_diaphanous_isoform_X2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007283 P spermatogenesis
GO:0016043 P cellular component organization
GO:0017048 F small GTPase binding
GO:0030036 P actin cytoskeleton organization
3791 O_BomoOtmSK13412_complete:A_BomoOtmSK_comp14639_c0_seq2
164bp
3792 O_BomoOtmSK13413_complete:A_BomoOtmSK_comp14639_c0_seq2
127bp
3793 O_BomoOtmSK13414_complete:A_BomoOtmSK_comp14639_c0_seq3
1080bp
 protein_diaphanous_isoform_X3_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007283 P spermatogenesis
GO:0016043 P cellular component organization
GO:0017048 F small GTPase binding
GO:0030036 P actin cytoskeleton organization
3794 O_BomoOtmSK13415_complete:A_BomoOtmSK_comp14639_c0_seq3
164bp
3795 O_BomoOtmSK13416_complete:A_BomoOtmSK_comp14639_c0_seq3
127bp
3796 O_BomoOtmSK13417_complete:A_BomoOtmSK_comp14639_c0_seq4
1085bp
 protein_diaphanous_isoform_X2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007283 P spermatogenesis
GO:0016043 P cellular component organization
GO:0017048 F small GTPase binding
GO:0030036 P actin cytoskeleton organization
3797 O_BomoOtmSK13418_complete:A_BomoOtmSK_comp14639_c0_seq4
164bp
3798 O_BomoOtmSK13419_complete:A_BomoOtmSK_comp14639_c0_seq4
127bp
3799 O_BomoOtmSK1341_complete:A_BomoOtmSK_comp4883_c0_seq1
409bp
 probable_tRNA_N6-adenosine_threonylcarbamoyltransferase,_mitochondrial_[Bombyx_mori]
GO:0000408 C EKC/KEOPS complex
GO:0002949 P tRNA threonylcarbamoyladenosine modification
GO:0004222 F metalloendopeptidase activity
GO:0005739 C mitochondrion
GO:0006508 P proteolysis
GO:0008033 P tRNA processing
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0046872 F metal ion binding
GO:0061711 F N(6)-L-threonylcarbamoyladenine synthase activity
3800 O_BomoOtmSK13420_5prime_partial:A_BomoOtmSK_comp14641_c0_seq1
188bp
 cuticular_protein_RR-1_motif_19_precursor_[Bombyx_mori]
GO:0042302 F structural constituent of cuticle
3801 O_BomoOtmSK13421_3prime_partial:A_BomoOtmSK_comp14642_c0_seq1
434bp
 U3_small_nucleolar_RNA-associated_protein_18_homolog_[Bombyx_mori]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0007275 P multicellular organism development
GO:0007405 P neuroblast proliferation
GO:0022008 P neurogenesis
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0032040 C small-subunit processome
GO:0034388 C Pwp2p-containing subcomplex of 90S preribosome
GO:0042585 C germinal vesicle
GO:0048132 P female germ-line stem cell asymmetric division
3802 O_BomoOtmSK13422_complete:A_BomoOtmSK_comp14644_c0_seq1
335bp
 DNA-(apurinic_or_apyrimidinic_site)_lyase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0007018 P microtubule-based movement
GO:0008152 P metabolic process
GO:0016887 F ATP hydrolysis activity
GO:0030286 C dynein complex
3803 O_BomoOtmSK13423_complete:A_BomoOtmSK_comp14644_c0_seq1
180bp
3804 O_BomoOtmSK13424_complete:A_BomoOtmSK_comp14644_c0_seq2
633bp
 DNA-(apurinic_or_apyrimidinic_site)_lyase_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003906 F DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008311 F double-stranded DNA 3'-5' exodeoxyribonuclease activity
GO:0008408 F 3'-5' exonuclease activity
GO:0016829 F lyase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3805 O_BomoOtmSK13425_complete:A_BomoOtmSK_comp14644_c0_seq2
293bp
3806 O_BomoOtmSK13426_complete:A_BomoOtmSK_comp14644_c0_seq2
104bp
3807 O_BomoOtmSK13427_complete:A_BomoOtmSK_comp14647_c0_seq1
446bp
 protein_prenyltransferase_alpha_subunit_repeat-containing_protein_1_[Bombyx_mori]
GO:0004659 F prenyltransferase activity
GO:0005737 C cytoplasm
GO:0008318 F protein prenyltransferase activity
GO:0016740 F transferase activity
GO:0018342 P protein prenylation
GO:1990234 C transferase complex
3808 O_BomoOtmSK13428_complete:A_BomoOtmSK_comp14648_c0_seq1
134bp
 lipopolysaccharide-induced_tumor_necrosis_factor-alpha_factor_homolog_[Bombyx_mori]
GO:0005125 F cytokine activity
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
3809 O_BomoOtmSK13429_5prime_partial:A_BomoOtmSK_comp14649_c0_seq1
438bp
 fasciculation_and_elongation_protein_zeta-2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0007165 P signal transduction
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:1902902 P negative regulation of autophagosome assembly
3810 O_BomoOtmSK1342_complete:A_BomoOtmSK_comp4885_c0_seq1
313bp
 solute_carrier_family_25_member_35_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
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