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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3751 O_BomoOtmSK13377_complete:A_BomoOtmSK_comp14629_c0_seq2
109bp
3752 O_BomoOtmSK13378_complete:A_BomoOtmSK_comp14630_c0_seq1
245bp
 ubiquinol-cytochrome-c_reductase_complex_assembly_factor_1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016020 C membrane
GO:0034551 P mitochondrial respiratory chain complex III assembly
GO:0070131 P positive regulation of mitochondrial translation
3753 O_BomoOtmSK13379_complete:A_BomoOtmSK_comp14631_c0_seq1
130bp
 leptin_receptor_gene-related_protein_isoform_X3_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003674 F molecular_function
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0008150 P biological_process
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3754 O_BomoOtmSK1337_5prime_partial:A_BomoOtmSK_comp4874_c0_seq1
114bp
 plexin-B_[Bombyx_mori]
GO:0002116 C semaphorin receptor complex
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0008045 P motor neuron axon guidance
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017154 F semaphorin receptor activity
GO:0030154 P cell differentiation
GO:0030334 P regulation of cell migration
GO:0035021 P negative regulation of Rac protein signal transduction
GO:0035025 P positive regulation of Rho protein signal transduction
GO:0048841 P regulation of axon extension involved in axon guidance
GO:0071526 P semaphorin-plexin signaling pathway
GO:0071678 P olfactory bulb axon guidance
GO:0097374 P sensory neuron axon guidance
GO:1902287 P semaphorin-plexin signaling pathway involved in axon guidance
3755 O_BomoOtmSK13380_complete:A_BomoOtmSK_comp14631_c0_seq2
131bp
 leptin_receptor_gene-related_protein_isoform_X3_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003674 F molecular_function
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0008150 P biological_process
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3756 O_BomoOtmSK13381_complete:A_BomoOtmSK_comp14631_c0_seq3
131bp
 leptin_receptor_gene-related_protein_isoform_X3_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003674 F molecular_function
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0008150 P biological_process
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3757 O_BomoOtmSK13382_complete:A_BomoOtmSK_comp14631_c0_seq4
130bp
 leptin_receptor_gene-related_protein_isoform_X3_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003674 F molecular_function
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0008150 P biological_process
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3758 O_BomoOtmSK13383_5prime_partial:A_BomoOtmSK_comp14632_c0_seq3
162bp
 intersectin-1_isoform_X5_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0006897 P endocytosis
GO:0007264 P small GTPase mediated signal transduction
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0019209 F kinase activator activity
GO:0030027 C lamellipodium
GO:0030054 C cell junction
GO:0030139 C endocytic vesicle
GO:0032947 F molecular adaptor activity
GO:0035023 P regulation of Rho protein signal transduction
GO:0035556 P intracellular signal transduction
GO:0042327 P positive regulation of phosphorylation
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0043065 P positive regulation of apoptotic process
GO:0043524 P negative regulation of neuron apoptotic process
GO:0043547 P positive regulation of GTPase activity
GO:0045202 C synapse
GO:0046872 F metal ion binding
GO:0048013 P ephrin receptor signaling pathway
GO:0048488 P synaptic vesicle endocytosis
GO:0051056 P regulation of small GTPase mediated signal transduction
GO:0051897 P positive regulation of protein kinase B signaling
GO:0070064 F proline-rich region binding
3759 O_BomoOtmSK13384_5prime_partial:A_BomoOtmSK_comp14632_c0_seq3
161bp
 phosphate_transporter_[Sporothrix_schenckii_1099-18]
3760 O_BomoOtmSK13385_complete:A_BomoOtmSK_comp14633_c0_seq1
128bp
 uncharacterized_protein_C20orf24_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0008150 P biological_process
3761 O_BomoOtmSK13386_complete:A_BomoOtmSK_comp14633_c0_seq1
109bp
3762 O_BomoOtmSK13387_complete:A_BomoOtmSK_comp14634_c0_seq1
1117bp
 probable_ubiquitin_carboxyl-terminal_hydrolase_FAF-X_isoform_X3_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006897 P endocytosis
GO:0007275 P multicellular organism development
GO:0007349 P cellularization
GO:0007601 P visual perception
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008354 P germ cell migration
GO:0008583 P mystery cell differentiation
GO:0009950 P dorsal/ventral axis specification
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030154 P cell differentiation
GO:0035192 P nuclear cortical migration
GO:0036459 F thiol-dependent deubiquitinase
GO:0045824 P negative regulation of innate immune response
GO:0045861 P negative regulation of proteolysis
GO:0048477 P oogenesis
GO:0050829 P defense response to Gram-negative bacterium
GO:0050896 P response to stimulus
3763 O_BomoOtmSK13388_3prime_partial:A_BomoOtmSK_comp14634_c0_seq1
232bp
 probable_ubiquitin_carboxyl-terminal_hydrolase_FAF-X_isoform_X3_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006897 P endocytosis
GO:0007275 P multicellular organism development
GO:0007349 P cellularization
GO:0007601 P visual perception
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008354 P germ cell migration
GO:0008583 P mystery cell differentiation
GO:0009950 P dorsal/ventral axis specification
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030154 P cell differentiation
GO:0035192 P nuclear cortical migration
GO:0036459 F thiol-dependent deubiquitinase
GO:0045824 P negative regulation of innate immune response
GO:0045861 P negative regulation of proteolysis
GO:0048477 P oogenesis
GO:0050829 P defense response to Gram-negative bacterium
GO:0050896 P response to stimulus
3764 O_BomoOtmSK13389_3prime_partial:A_BomoOtmSK_comp14634_c0_seq2
1329bp
 probable_ubiquitin_carboxyl-terminal_hydrolase_FAF-X_isoform_X3_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006897 P endocytosis
GO:0007275 P multicellular organism development
GO:0007349 P cellularization
GO:0007601 P visual perception
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008354 P germ cell migration
GO:0008583 P mystery cell differentiation
GO:0009950 P dorsal/ventral axis specification
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030154 P cell differentiation
GO:0035192 P nuclear cortical migration
GO:0036459 F thiol-dependent deubiquitinase
GO:0045824 P negative regulation of innate immune response
GO:0045861 P negative regulation of proteolysis
GO:0048477 P oogenesis
GO:0050829 P defense response to Gram-negative bacterium
GO:0050896 P response to stimulus
3765 O_BomoOtmSK1338_5prime_partial:A_BomoOtmSK_comp4874_c0_seq2
1716bp
 plexin-B_[Bombyx_mori]
GO:0002116 C semaphorin receptor complex
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007165 P signal transduction
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0008045 P motor neuron axon guidance
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017154 F semaphorin receptor activity
GO:0021602 P cranial nerve morphogenesis
GO:0021610 P facial nerve morphogenesis
GO:0021612 P facial nerve structural organization
GO:0021615 P glossopharyngeal nerve morphogenesis
GO:0021636 P trigeminal nerve morphogenesis
GO:0021637 P trigeminal nerve structural organization
GO:0021644 P vagus nerve morphogenesis
GO:0021784 P postganglionic parasympathetic fiber development
GO:0021785 P branchiomotor neuron axon guidance
GO:0021793 P chemorepulsion of branchiomotor axon
GO:0021960 P anterior commissure morphogenesis
GO:0030334 P regulation of cell migration
GO:0048485 P sympathetic nervous system development
GO:0048812 P neuron projection morphogenesis
GO:0048841 P regulation of axon extension involved in axon guidance
GO:0050923 P regulation of negative chemotaxis
GO:0071526 P semaphorin-plexin signaling pathway
GO:1902287 P semaphorin-plexin signaling pathway involved in axon guidance
3766 O_BomoOtmSK13390_internal:A_BomoOtmSK_comp14635_c0_seq1
467bp
 pentatricopeptide_repeat-containing_protein_1,_mitochondrial_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0008033 P tRNA processing
GO:0042780 P tRNA 3'-end processing
3767 O_BomoOtmSK13391_complete:A_BomoOtmSK_comp14636_c0_seq1
827bp
 extended_synaptotagmin-1_isoform_X2_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005544 F calcium-dependent phospholipid binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0008429 F phosphatidylethanolamine binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031210 F phosphatidylcholine binding
GO:0031227 C intrinsic component of endoplasmic reticulum membrane
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0035091 F phosphatidylinositol binding
GO:0042802 F identical protein binding
GO:0044232 C organelle membrane contact site
GO:0046872 F metal ion binding
3768 O_BomoOtmSK13392_complete:A_BomoOtmSK_comp14636_c0_seq1
103bp
3769 O_BomoOtmSK13393_complete:A_BomoOtmSK_comp14636_c0_seq2
818bp
 extended_synaptotagmin-1_isoform_X1_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005544 F calcium-dependent phospholipid binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0008429 F phosphatidylethanolamine binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031210 F phosphatidylcholine binding
GO:0031227 C intrinsic component of endoplasmic reticulum membrane
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0035091 F phosphatidylinositol binding
GO:0042802 F identical protein binding
GO:0044232 C organelle membrane contact site
GO:0046872 F metal ion binding
3770 O_BomoOtmSK13394_complete:A_BomoOtmSK_comp14636_c0_seq2
103bp
3771 O_BomoOtmSK13395_complete:A_BomoOtmSK_comp14636_c0_seq3
824bp
 extended_synaptotagmin-1_isoform_X2_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005544 F calcium-dependent phospholipid binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0008429 F phosphatidylethanolamine binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031210 F phosphatidylcholine binding
GO:0031227 C intrinsic component of endoplasmic reticulum membrane
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0035091 F phosphatidylinositol binding
GO:0042802 F identical protein binding
GO:0044232 C organelle membrane contact site
GO:0046872 F metal ion binding
3772 O_BomoOtmSK13396_complete:A_BomoOtmSK_comp14636_c0_seq3
103bp
3773 O_BomoOtmSK13397_complete:A_BomoOtmSK_comp14636_c0_seq4
821bp
 extended_synaptotagmin-1_isoform_X1_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005544 F calcium-dependent phospholipid binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0008429 F phosphatidylethanolamine binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031210 F phosphatidylcholine binding
GO:0031227 C intrinsic component of endoplasmic reticulum membrane
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0035091 F phosphatidylinositol binding
GO:0042802 F identical protein binding
GO:0044232 C organelle membrane contact site
GO:0046872 F metal ion binding
3774 O_BomoOtmSK13398_complete:A_BomoOtmSK_comp14636_c0_seq4
103bp
3775 O_BomoOtmSK13399_complete:A_BomoOtmSK_comp14636_c0_seq5
450bp
 extended_synaptotagmin-1_isoform_X1_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005544 F calcium-dependent phospholipid binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0008429 F phosphatidylethanolamine binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031210 F phosphatidylcholine binding
GO:0031227 C intrinsic component of endoplasmic reticulum membrane
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0035091 F phosphatidylinositol binding
GO:0042802 F identical protein binding
GO:0044232 C organelle membrane contact site
GO:0046872 F metal ion binding
3776 O_BomoOtmSK1339_internal:A_BomoOtmSK_comp4877_c0_seq1
419bp
 gamma-butyrobetaine_dioxygenase_[Bombyx_mori]
GO:0005506 F iron ion binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0008336 F gamma-butyrobetaine dioxygenase activity
GO:0016491 F oxidoreductase activity
GO:0045329 P carnitine biosynthetic process
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
3777 O_BomoOtmSK133_3prime_partial:A_BomoOtmSK_comp516_c0_seq1
127bp
 AGO3_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0005845 C mRNA cap binding complex
GO:0006417 P regulation of translation
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007286 P spermatid development
GO:0019901 F protein kinase binding
GO:0030154 P cell differentiation
GO:0031047 P gene silencing by RNA
GO:0033391 C chromatoid body
GO:0034584 F piRNA binding
GO:0034587 P piRNA metabolic process
GO:0043186 C P granule
GO:0051321 P meiotic cell cycle
GO:0097433 C dense body
3778 O_BomoOtmSK13400_complete:A_BomoOtmSK_comp14636_c0_seq5
103bp
3779 O_BomoOtmSK13401_3prime_partial:A_BomoOtmSK_comp14637_c0_seq2
126bp
3780 O_BomoOtmSK13402_complete:A_BomoOtmSK_comp14637_c0_seq2
118bp
 DNA-directed_RNA_polymerase_II_subunit_RPB11_[Bombyx_mori]
GO:0001055 F RNA polymerase II activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0046983 F protein dimerization activity
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