SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
previous next from show/35878
No. Name
Length
Chromosome No./Scaffold Id
Scaffold Length
BLAST (vs nr) Gene ontology
3721 O_BomoOtmSK1334_5prime_partial:A_BomoOtmSK_comp4873_c0_seq2
470bp
leucine-rich_repeat-containing_protein_40_isoform_X1_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0008150 P biological_process
3722 O_BomoOtmSK13350_complete:A_BomoOtmSK_comp14624_c0_seq4
120bp
3723 O_BomoOtmSK13351_5prime_partial:A_BomoOtmSK_comp14624_c0_seq4
113bp
uncharacterized_protein_LOC105842480_[Bombyx_mori]
3724 O_BomoOtmSK13352_complete:A_BomoOtmSK_comp14624_c0_seq5
195bp
U2_small_nuclear_ribonucleoprotein_auxiliary_factor_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000245 P spliceosomal complex assembly
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0008187 F poly-pyrimidine tract binding
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030628 F pre-mRNA 3'-splice site binding
GO:0046833 P positive regulation of RNA export from nucleus
GO:0046982 F protein heterodimerization activity
GO:0051168 P nuclear export
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0089701 C U2AF complex
3725 O_BomoOtmSK13353_complete:A_BomoOtmSK_comp14624_c0_seq5
120bp
3726 O_BomoOtmSK13354_5prime_partial:A_BomoOtmSK_comp14624_c0_seq5
113bp
uncharacterized_protein_LOC105842480_[Bombyx_mori]
3727 O_BomoOtmSK13355_complete:A_BomoOtmSK_comp14624_c0_seq6
418bp
U2_small_nuclear_ribonucleoprotein_auxiliary_factor_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000245 P spliceosomal complex assembly
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0008187 F poly-pyrimidine tract binding
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030628 F pre-mRNA 3'-splice site binding
GO:0046833 P positive regulation of RNA export from nucleus
GO:0046982 F protein heterodimerization activity
GO:0051168 P nuclear export
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0089701 C U2AF complex
3728 O_BomoOtmSK13356_complete:A_BomoOtmSK_comp14624_c0_seq6
120bp
3729 O_BomoOtmSK13357_5prime_partial:A_BomoOtmSK_comp14624_c0_seq6
113bp
uncharacterized_protein_LOC105842480_[Bombyx_mori]
3730 O_BomoOtmSK13358_complete:A_BomoOtmSK_comp14624_c0_seq7
197bp
U2_small_nuclear_ribonucleoprotein_auxiliary_factor_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000245 P spliceosomal complex assembly
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0008187 F poly-pyrimidine tract binding
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030628 F pre-mRNA 3'-splice site binding
GO:0046833 P positive regulation of RNA export from nucleus
GO:0046982 F protein heterodimerization activity
GO:0051168 P nuclear export
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0089701 C U2AF complex
3731 O_BomoOtmSK13359_complete:A_BomoOtmSK_comp14624_c0_seq7
120bp
3732 O_BomoOtmSK1335_3prime_partial:A_BomoOtmSK_comp4873_c0_seq3
139bp
leucine-rich_repeat-containing_protein_40_isoform_X2_[Bombyx_mori]
3733 O_BomoOtmSK13360_5prime_partial:A_BomoOtmSK_comp14624_c0_seq7
113bp
uncharacterized_protein_LOC105842480_[Bombyx_mori]
3734 O_BomoOtmSK13361_complete:A_BomoOtmSK_comp14625_c0_seq1
683bp
conserved_oligomeric_Golgi_complex_subunit_7_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005730 C nucleolus
GO:0005794 C Golgi apparatus
GO:0006486 P protein glycosylation
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0007030 P Golgi organization
GO:0008150 P biological_process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017119 C Golgi transport complex
GO:0033365 P protein localization to organelle
GO:0034067 P protein localization to Golgi apparatus
GO:0043231 C intracellular membrane-bounded organelle
GO:0050821 P protein stabilization
3735 O_BomoOtmSK13362_complete:A_BomoOtmSK_comp14625_c0_seq1
223bp
3736 O_BomoOtmSK13363_complete:A_BomoOtmSK_comp14625_c0_seq2
341bp
conserved_oligomeric_Golgi_complex_subunit_7_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005730 C nucleolus
GO:0005794 C Golgi apparatus
GO:0006486 P protein glycosylation
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0007030 P Golgi organization
GO:0008150 P biological_process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017119 C Golgi transport complex
GO:0033365 P protein localization to organelle
GO:0034067 P protein localization to Golgi apparatus
GO:0043231 C intracellular membrane-bounded organelle
GO:0050821 P protein stabilization
3737 O_BomoOtmSK13364_complete:A_BomoOtmSK_comp14625_c0_seq2
259bp
conserved_oligomeric_Golgi_complex_subunit_7_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000916 P actomyosin contractile ring contraction
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0007030 P Golgi organization
GO:0007112 P male meiosis cytokinesis
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017119 C Golgi transport complex
GO:0036063 C acroblast
3738 O_BomoOtmSK13365_complete:A_BomoOtmSK_comp14625_c0_seq2
140bp
3739 O_BomoOtmSK13366_internal:A_BomoOtmSK_comp14626_c1_seq1
379bp
telomere-associated_protein_RIF1_[Bombyx_mori]
3740 O_BomoOtmSK13367_3prime_partial:A_BomoOtmSK_comp14626_c2_seq1
366bp
telomere-associated_protein_RIF1_[Bombyx_mori]
GO:0000781 C chromosome, telomeric region
GO:0001939 C female pronucleus
GO:0001940 C male pronucleus
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0019827 P stem cell population maintenance
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
3741 O_BomoOtmSK13368_5prime_partial:A_BomoOtmSK_comp14627_c1_seq1
708bp
LOW_QUALITY_PROTEIN:_SET_and_MYND_domain-containing_protein_4_[Bombyx_mori]
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0046872 F metal ion binding
3742 O_BomoOtmSK13369_5prime_partial:A_BomoOtmSK_comp14628_c0_seq1
125bp
3743 O_BomoOtmSK1336_complete:A_BomoOtmSK_comp4874_c0_seq1
1586bp
plexin-B_[Bombyx_mori]
GO:0002116 C semaphorin receptor complex
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0008045 P motor neuron axon guidance
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017154 F semaphorin receptor activity
GO:0030154 P cell differentiation
GO:0030334 P regulation of cell migration
GO:0035021 P negative regulation of Rac protein signal transduction
GO:0035025 P positive regulation of Rho protein signal transduction
GO:0048841 P regulation of axon extension involved in axon guidance
GO:0071526 P semaphorin-plexin signaling pathway
GO:0071678 P olfactory bulb axon guidance
GO:0097374 P sensory neuron axon guidance
GO:1902287 P semaphorin-plexin signaling pathway involved in axon guidance
3744 O_BomoOtmSK13370_3prime_partial:A_BomoOtmSK_comp14628_c0_seq1
111bp
3745 O_BomoOtmSK13371_5prime_partial:A_BomoOtmSK_comp14628_c0_seq2
150bp
3746 O_BomoOtmSK13372_complete:A_BomoOtmSK_comp14629_c0_seq1
484bp
bone_morphogenetic_protein_receptor_type-1B_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001501 P skeletal system development
GO:0001502 P cartilage condensation
GO:0001550 P ovarian cumulus expansion
GO:0001654 P eye development
GO:0001948 F protein binding
GO:0002062 P chondrocyte differentiation
GO:0002063 P chondrocyte development
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004675 F transmembrane receptor protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0005024 F transforming growth factor beta-activated receptor activity
GO:0005025 F transforming growth factor beta receptor activity, type I
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0006703 P estrogen biosynthetic process
GO:0006954 P inflammatory response
GO:0007178 P transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0009953 P dorsal/ventral pattern formation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0023014 P signal transduction
GO:0030154 P cell differentiation
GO:0030166 P proteoglycan biosynthetic process
GO:0030425 C dendrite
GO:0030501 P positive regulation of bone mineralization
GO:0030509 P BMP signaling pathway
GO:0031290 P retinal ganglion cell axon guidance
GO:0032332 P positive regulation of chondrocyte differentiation
GO:0035108 P limb morphogenesis
GO:0042698 P ovulation cycle
GO:0043010 P camera-type eye development
GO:0043025 C neuronal cell body
GO:0045597 P positive regulation of cell differentiation
GO:0045669 P positive regulation of osteoblast differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046332 F SMAD binding
GO:0046872 F metal ion binding
GO:0051216 P cartilage development
GO:0060041 P retina development in camera-type eye
GO:0060350 P endochondral bone morphogenesis
GO:0061036 P positive regulation of cartilage development
GO:0071363 P cellular response to growth factor stimulus
GO:0071773 P cellular response to BMP stimulus
GO:1902043 P positive regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:1902731 P negative regulation of chondrocyte proliferation
3747 O_BomoOtmSK13373_complete:A_BomoOtmSK_comp14629_c0_seq1
121bp
PREDICTED:_netrin_receptor_UNC5C_[Astyanax_mexicanus]
3748 O_BomoOtmSK13374_complete:A_BomoOtmSK_comp14629_c0_seq1
109bp
3749 O_BomoOtmSK13375_complete:A_BomoOtmSK_comp14629_c0_seq2
486bp
bone_morphogenetic_protein_receptor_type-1B_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001501 P skeletal system development
GO:0001502 P cartilage condensation
GO:0001550 P ovarian cumulus expansion
GO:0001654 P eye development
GO:0001948 F protein binding
GO:0002062 P chondrocyte differentiation
GO:0002063 P chondrocyte development
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004675 F transmembrane receptor protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0005024 F transforming growth factor beta-activated receptor activity
GO:0005025 F transforming growth factor beta receptor activity, type I
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0006703 P estrogen biosynthetic process
GO:0006954 P inflammatory response
GO:0007178 P transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0009953 P dorsal/ventral pattern formation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0023014 P signal transduction
GO:0030154 P cell differentiation
GO:0030166 P proteoglycan biosynthetic process
GO:0030425 C dendrite
GO:0030501 P positive regulation of bone mineralization
GO:0030509 P BMP signaling pathway
GO:0031290 P retinal ganglion cell axon guidance
GO:0032332 P positive regulation of chondrocyte differentiation
GO:0035108 P limb morphogenesis
GO:0042698 P ovulation cycle
GO:0043010 P camera-type eye development
GO:0043025 C neuronal cell body
GO:0045597 P positive regulation of cell differentiation
GO:0045669 P positive regulation of osteoblast differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046332 F SMAD binding
GO:0046872 F metal ion binding
GO:0051216 P cartilage development
GO:0060041 P retina development in camera-type eye
GO:0060350 P endochondral bone morphogenesis
GO:0061036 P positive regulation of cartilage development
GO:0071363 P cellular response to growth factor stimulus
GO:0071773 P cellular response to BMP stimulus
GO:1902043 P positive regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:1902731 P negative regulation of chondrocyte proliferation
3750 O_BomoOtmSK13376_complete:A_BomoOtmSK_comp14629_c0_seq2
121bp
PREDICTED:_netrin_receptor_UNC5C_[Astyanax_mexicanus]
previous next from show/35878

- SilkBase 1999-2023 -