SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/35878
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3691 O_BomoOtmSK13322_complete:A_BomoOtmSK_comp14620_c0_seq1
109bp
3692 O_BomoOtmSK13323_3prime_partial:A_BomoOtmSK_comp14621_c0_seq1
190bp
 hypothetical_protein_RR48_10943_[Papilio_machaon]
3693 O_BomoOtmSK13324_complete:A_BomoOtmSK_comp14621_c0_seq1
106bp
3694 O_BomoOtmSK13325_5prime_partial:A_BomoOtmSK_comp14621_c0_seq2
665bp
 serine/threonine-protein_phosphatase_2A_regulatory_subunit_B''_subunit_delta_isoform_X1_[Bombyx_mori]
GO:0000159 C protein phosphatase type 2A complex
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006470 P protein dephosphorylation
GO:0007050 P regulation of cell cycle
GO:0008601 F protein phosphatase regulator activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0046872 F metal ion binding
3695 O_BomoOtmSK13326_complete:A_BomoOtmSK_comp14621_c0_seq2
249bp
3696 O_BomoOtmSK13327_3prime_partial:A_BomoOtmSK_comp14621_c0_seq3
190bp
 hypothetical_protein_RR48_10943_[Papilio_machaon]
3697 O_BomoOtmSK13328_complete:A_BomoOtmSK_comp14621_c0_seq3
106bp
3698 O_BomoOtmSK13329_5prime_partial:A_BomoOtmSK_comp14621_c0_seq4
764bp
 serine/threonine-protein_phosphatase_2A_regulatory_subunit_B''_subunit_delta_isoform_X2_[Bombyx_mori]
GO:0000159 C protein phosphatase type 2A complex
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006470 P protein dephosphorylation
GO:0007050 P regulation of cell cycle
GO:0008601 F protein phosphatase regulator activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0046872 F metal ion binding
3699 O_BomoOtmSK1332_complete:A_BomoOtmSK_comp4872_c0_seq1
101bp
3700 O_BomoOtmSK13330_complete:A_BomoOtmSK_comp14621_c0_seq4
249bp
3701 O_BomoOtmSK13331_5prime_partial:A_BomoOtmSK_comp14621_c0_seq5
284bp
 serine/threonine-protein_phosphatase_2A_regulatory_subunit_B''_subunit_delta_isoform_X1_[Bombyx_mori]
GO:0000159 C protein phosphatase type 2A complex
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006470 P protein dephosphorylation
GO:0007050 P regulation of cell cycle
GO:0008601 F protein phosphatase regulator activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0046872 F metal ion binding
3702 O_BomoOtmSK13332_5prime_partial:A_BomoOtmSK_comp14621_c0_seq6
558bp
 serine/threonine-protein_phosphatase_2A_regulatory_subunit_B''_subunit_delta_isoform_X2_[Bombyx_mori]
GO:0000159 C protein phosphatase type 2A complex
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006470 P protein dephosphorylation
GO:0007050 P regulation of cell cycle
GO:0008601 F protein phosphatase regulator activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0046872 F metal ion binding
3703 O_BomoOtmSK13333_complete:A_BomoOtmSK_comp14621_c0_seq6
249bp
3704 O_BomoOtmSK13334_complete:A_BomoOtmSK_comp14621_c0_seq6
222bp
 serine/threonine-protein_phosphatase_2A_regulatory_subunit_B''_subunit_delta_isoform_X1_[Bombyx_mori]
3705 O_BomoOtmSK13335_5prime_partial:A_BomoOtmSK_comp14621_c0_seq7
459bp
 serine/threonine-protein_phosphatase_2A_regulatory_subunit_B''_subunit_delta_isoform_X1_[Bombyx_mori]
GO:0000159 C protein phosphatase type 2A complex
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006470 P protein dephosphorylation
GO:0007050 P regulation of cell cycle
GO:0008601 F protein phosphatase regulator activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0046872 F metal ion binding
3706 O_BomoOtmSK13336_complete:A_BomoOtmSK_comp14621_c0_seq7
249bp
3707 O_BomoOtmSK13337_complete:A_BomoOtmSK_comp14621_c0_seq7
222bp
 serine/threonine-protein_phosphatase_2A_regulatory_subunit_B''_subunit_delta_isoform_X1_[Bombyx_mori]
3708 O_BomoOtmSK13338_5prime_partial:A_BomoOtmSK_comp14621_c0_seq8
383bp
 serine/threonine-protein_phosphatase_2A_regulatory_subunit_B''_subunit_delta_isoform_X2_[Bombyx_mori]
GO:0000159 C protein phosphatase type 2A complex
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006470 P protein dephosphorylation
GO:0007050 P regulation of cell cycle
GO:0008601 F protein phosphatase regulator activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0046872 F metal ion binding
3709 O_BomoOtmSK13339_complete:A_BomoOtmSK_comp14622_c0_seq2
368bp
 GTP-binding_protein_128up_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0005525 F GTP binding
3710 O_BomoOtmSK1333_complete:A_BomoOtmSK_comp4873_c0_seq1
102bp
 leucine-rich_repeat-containing_protein_40_isoform_X2_[Bombyx_mori]
3711 O_BomoOtmSK13340_complete:A_BomoOtmSK_comp14622_c0_seq2
152bp
 hypothetical_protein_HERIO_2169_[Hepatospora_eriocheir]
3712 O_BomoOtmSK13341_3prime_partial:A_BomoOtmSK_comp14623_c0_seq1
235bp
 translin_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0043565 F sequence-specific DNA binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3713 O_BomoOtmSK13342_complete:A_BomoOtmSK_comp14624_c0_seq1
424bp
 U2_small_nuclear_ribonucleoprotein_auxiliary_factor_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000245 P spliceosomal complex assembly
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0008187 F poly-pyrimidine tract binding
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030628 F pre-mRNA 3'-splice site binding
GO:0046833 P positive regulation of RNA export from nucleus
GO:0046982 F protein heterodimerization activity
GO:0051168 P nuclear export
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0089701 C U2AF complex
3714 O_BomoOtmSK13343_complete:A_BomoOtmSK_comp14624_c0_seq1
120bp
3715 O_BomoOtmSK13344_5prime_partial:A_BomoOtmSK_comp14624_c0_seq1
113bp
 uncharacterized_protein_LOC105842480_[Bombyx_mori]
3716 O_BomoOtmSK13345_complete:A_BomoOtmSK_comp14624_c0_seq2
250bp
 U2_small_nuclear_ribonucleoprotein_auxiliary_factor_2_isoform_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000245 P spliceosomal complex assembly
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0008187 F poly-pyrimidine tract binding
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030628 F pre-mRNA 3'-splice site binding
GO:0046833 P positive regulation of RNA export from nucleus
GO:0046982 F protein heterodimerization activity
GO:0051168 P nuclear export
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0089701 C U2AF complex
3717 O_BomoOtmSK13346_complete:A_BomoOtmSK_comp14624_c0_seq3
189bp
 U2_small_nuclear_ribonucleoprotein_auxiliary_factor_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000245 P spliceosomal complex assembly
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0008187 F poly-pyrimidine tract binding
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030628 F pre-mRNA 3'-splice site binding
GO:0046833 P positive regulation of RNA export from nucleus
GO:0046982 F protein heterodimerization activity
GO:0051168 P nuclear export
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0089701 C U2AF complex
3718 O_BomoOtmSK13347_complete:A_BomoOtmSK_comp14624_c0_seq3
120bp
3719 O_BomoOtmSK13348_5prime_partial:A_BomoOtmSK_comp14624_c0_seq3
113bp
 uncharacterized_protein_LOC105842480_[Bombyx_mori]
3720 O_BomoOtmSK13349_complete:A_BomoOtmSK_comp14624_c0_seq4
203bp
 U2_small_nuclear_ribonucleoprotein_auxiliary_factor_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000245 P spliceosomal complex assembly
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0008187 F poly-pyrimidine tract binding
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030628 F pre-mRNA 3'-splice site binding
GO:0046833 P positive regulation of RNA export from nucleus
GO:0046982 F protein heterodimerization activity
GO:0051168 P nuclear export
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0089701 C U2AF complex
previous next from show/35878

- SilkBase 1999-2023 -