SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/35878
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3661 O_BomoOtmSK13296_5prime_partial:A_BomoOtmSK_comp14608_c0_seq3
1041bp
 uncharacterized_protein_LOC101742695_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3662 O_BomoOtmSK13297_complete:A_BomoOtmSK_comp14608_c0_seq3
152bp
3663 O_BomoOtmSK13298_complete:A_BomoOtmSK_comp14609_c0_seq1
231bp
 PREDICTED:_uncharacterized_protein_K02A2.6-like_isoform_X1_[Diaphorina_citri]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3664 O_BomoOtmSK13299_complete:A_BomoOtmSK_comp14611_c0_seq1
114bp
 Chitin_synthase_regulatory_factor_2_[Operophtera_brumata]
3665 O_BomoOtmSK1329_3prime_partial:A_BomoOtmSK_comp4872_c0_seq1
441bp
 serine/threonine-protein_kinase_Genghis_Khan_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0006468 P protein phosphorylation
GO:0008039 P synaptic target recognition
GO:0008064 P regulation of actin polymerization or depolymerization
GO:0008154 P actin polymerization or depolymerization
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030424 C axon
GO:0030426 C growth cone
GO:0030833 P regulation of actin filament polymerization
GO:0035556 P intracellular signal transduction
GO:0046872 F metal ion binding
3666 O_BomoOtmSK132_internal:A_BomoOtmSK_comp514_c0_seq1
124bp
 hypothetical_protein_RP20_CCG006108_[Aedes_albopictus]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004190 F aspartic-type endopeptidase activity
GO:0005524 F ATP binding
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
3667 O_BomoOtmSK13300_complete:A_BomoOtmSK_comp14611_c0_seq2
290bp
 Chitin_synthase_regulatory_factor_2_[Operophtera_brumata]
GO:0005628 C prospore membrane
GO:0005737 C cytoplasm
GO:0006031 P chitin biosynthetic process
GO:0008047 F enzyme activator activity
GO:0016020 C membrane
GO:0030435 P sporulation resulting in formation of a cellular spore
GO:0030437 P ascospore formation
GO:0043085 P positive regulation of catalytic activity
GO:0071555 P cell wall organization
3668 O_BomoOtmSK13301_complete:A_BomoOtmSK_comp14611_c0_seq2
100bp
 Chitin_synthase_regulatory_factor_2_[Operophtera_brumata]
3669 O_BomoOtmSK13302_5prime_partial:A_BomoOtmSK_comp14613_c0_seq1
538bp
 fibroblast_growth_factor_receptor_precursor_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001710 P mesodermal cell fate commitment
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004714 F transmembrane receptor protein tyrosine kinase activity
GO:0005007 F fibroblast growth factor-activated receptor activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0006468 P protein phosphorylation
GO:0007275 P multicellular organism development
GO:0007280 P pole cell migration
GO:0007369 P gastrulation
GO:0007417 P central nervous system development
GO:0007419 P ventral cord development
GO:0007431 P salivary gland development
GO:0007492 P endoderm development
GO:0007493 P endodermal cell fate determination
GO:0007498 P mesoderm development
GO:0007500 P mesodermal cell fate determination
GO:0007506 P gonadal mesoderm development
GO:0007507 P heart development
GO:0007509 P mesoderm migration involved in gastrulation
GO:0007517 P muscle organ development
GO:0007522 P visceral muscle development
GO:0007523 P larval visceral muscle development
GO:0007525 P somatic muscle development
GO:0008078 P mesodermal cell migration
GO:0008284 P positive regulation of cell population proliferation
GO:0008347 P glial cell migration
GO:0008354 P germ cell migration
GO:0008360 P regulation of cell shape
GO:0008406 P gonad development
GO:0008543 P fibroblast growth factor receptor signaling pathway
GO:0010001 P glial cell differentiation
GO:0010002 P cardioblast differentiation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016477 P cell migration
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0019233 P sensory perception of pain
GO:0021782 P glial cell development
GO:0045089 P positive regulation of innate immune response
GO:0048542 P lymph gland development
GO:0048747 P muscle cell development
GO:0050829 P defense response to Gram-negative bacterium
GO:0061320 P pericardial nephrocyte differentiation
3670 O_BomoOtmSK13303_complete:A_BomoOtmSK_comp14613_c0_seq1
142bp
3671 O_BomoOtmSK13304_complete:A_BomoOtmSK_comp14613_c0_seq2
860bp
 fibroblast_growth_factor_receptor_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001710 P mesodermal cell fate commitment
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004714 F transmembrane receptor protein tyrosine kinase activity
GO:0005007 F fibroblast growth factor-activated receptor activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0006468 P protein phosphorylation
GO:0007275 P multicellular organism development
GO:0007280 P pole cell migration
GO:0007369 P gastrulation
GO:0007417 P central nervous system development
GO:0007419 P ventral cord development
GO:0007431 P salivary gland development
GO:0007492 P endoderm development
GO:0007493 P endodermal cell fate determination
GO:0007498 P mesoderm development
GO:0007500 P mesodermal cell fate determination
GO:0007506 P gonadal mesoderm development
GO:0007507 P heart development
GO:0007509 P mesoderm migration involved in gastrulation
GO:0007517 P muscle organ development
GO:0007522 P visceral muscle development
GO:0007523 P larval visceral muscle development
GO:0007525 P somatic muscle development
GO:0008078 P mesodermal cell migration
GO:0008284 P positive regulation of cell population proliferation
GO:0008347 P glial cell migration
GO:0008354 P germ cell migration
GO:0008360 P regulation of cell shape
GO:0008406 P gonad development
GO:0008543 P fibroblast growth factor receptor signaling pathway
GO:0010001 P glial cell differentiation
GO:0010002 P cardioblast differentiation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016477 P cell migration
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0019233 P sensory perception of pain
GO:0021782 P glial cell development
GO:0045089 P positive regulation of innate immune response
GO:0048542 P lymph gland development
GO:0048747 P muscle cell development
GO:0050829 P defense response to Gram-negative bacterium
GO:0061320 P pericardial nephrocyte differentiation
3672 O_BomoOtmSK13305_complete:A_BomoOtmSK_comp14613_c0_seq2
142bp
3673 O_BomoOtmSK13306_complete:A_BomoOtmSK_comp14614_c0_seq1
199bp
 zinc_finger_matrin-type_protein_2_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0008270 F zinc ion binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0046872 F metal ion binding
3674 O_BomoOtmSK13307_internal:A_BomoOtmSK_comp14615_c0_seq1
187bp
 uncharacterized_protein_LOC101735724_[Bombyx_mori]
3675 O_BomoOtmSK13308_5prime_partial:A_BomoOtmSK_comp14615_c0_seq2
877bp
 uncharacterized_protein_LOC101735724_[Bombyx_mori]
3676 O_BomoOtmSK13309_3prime_partial:A_BomoOtmSK_comp14615_c0_seq3
620bp
 uncharacterized_protein_LOC101735724_[Bombyx_mori]
GO:0000127 C transcription factor TFIIIC complex
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006383 P transcription by RNA polymerase III
GO:0009303 P rRNA transcription
GO:0009304 P tRNA transcription
GO:0016020 C membrane
GO:0030529 C ribonucleoprotein complex
GO:0042791 P 5S class rRNA transcription by RNA polymerase III
GO:0042797 P tRNA transcription by RNA polymerase III
3677 O_BomoOtmSK1330_5prime_partial:A_BomoOtmSK_comp4872_c0_seq1
150bp
3678 O_BomoOtmSK13310_5prime_partial:A_BomoOtmSK_comp14616_c0_seq3
186bp
 protein_abrupt-like_[Bombyx_mori]
3679 O_BomoOtmSK13311_complete:A_BomoOtmSK_comp14617_c0_seq1
290bp
 uncharacterized_protein_LOC105841856_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005730 C nucleolus
GO:0046872 F metal ion binding
3680 O_BomoOtmSK13312_complete:A_BomoOtmSK_comp14617_c0_seq1
100bp
3681 O_BomoOtmSK13313_3prime_partial:A_BomoOtmSK_comp14618_c0_seq1
2017bp
 pecanex-like_protein_1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007029 P endoplasmic reticulum organization
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
GO:0046331 P lateral inhibition
3682 O_BomoOtmSK13314_complete:A_BomoOtmSK_comp14618_c0_seq1
153bp
3683 O_BomoOtmSK13315_complete:A_BomoOtmSK_comp14618_c0_seq1
110bp
3684 O_BomoOtmSK13316_complete:A_BomoOtmSK_comp14619_c0_seq1
510bp
 proton-coupled_amino_acid_transporter-like_protein_pathetic_isoform_X1_[Bombyx_mori]
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015180 F L-alanine transmembrane transporter activity
GO:0015193 F L-proline transmembrane transporter activity
GO:0015196 F L-tryptophan transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015808 P L-alanine transport
GO:0015824 P proline transport
GO:0015827 P tryptophan transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035524 P proline transmembrane transport
GO:0055085 P transmembrane transport
3685 O_BomoOtmSK13317_complete:A_BomoOtmSK_comp14619_c0_seq2
510bp
 proton-coupled_amino_acid_transporter-like_protein_pathetic_isoform_X1_[Bombyx_mori]
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015180 F L-alanine transmembrane transporter activity
GO:0015193 F L-proline transmembrane transporter activity
GO:0015196 F L-tryptophan transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015808 P L-alanine transport
GO:0015824 P proline transport
GO:0015827 P tryptophan transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035524 P proline transmembrane transport
GO:0055085 P transmembrane transport
3686 O_BomoOtmSK13318_complete:A_BomoOtmSK_comp14619_c0_seq3
441bp
 proton-coupled_amino_acid_transporter-like_protein_pathetic_isoform_X1_[Bombyx_mori]
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015180 F L-alanine transmembrane transporter activity
GO:0015193 F L-proline transmembrane transporter activity
GO:0015196 F L-tryptophan transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015808 P L-alanine transport
GO:0015824 P proline transport
GO:0015827 P tryptophan transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035524 P proline transmembrane transport
GO:0055085 P transmembrane transport
3687 O_BomoOtmSK13319_complete:A_BomoOtmSK_comp14619_c0_seq3
110bp
3688 O_BomoOtmSK1331_5prime_partial:A_BomoOtmSK_comp4872_c0_seq1
108bp
3689 O_BomoOtmSK13320_complete:A_BomoOtmSK_comp14620_c0_seq1
712bp
 uncharacterized_protein_LOC101743063_[Bombyx_mori]
3690 O_BomoOtmSK13321_complete:A_BomoOtmSK_comp14620_c0_seq1
145bp
previous next from show/35878

- SilkBase 1999-2023 -