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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3631 O_BomoOtmSK13269_3prime_partial:A_BomoOtmSK_comp14595_c0_seq6
146bp
3632 O_BomoOtmSK1326_5prime_partial:A_BomoOtmSK_comp4870_c0_seq2
141bp
3633 O_BomoOtmSK13270_internal:A_BomoOtmSK_comp14596_c0_seq1
387bp
 Bloom_syndrome_protein_homolog_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000403 F Y-form DNA binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0000731 P DNA synthesis involved in DNA repair
GO:0000732 P strand displacement
GO:0000733 P obsolete DNA strand renaturation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003824 F catalytic activity
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007131 P reciprocal meiotic recombination
GO:0008026 F helicase activity
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0009378 F four-way junction helicase activity
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0043140 F 3'-5' DNA helicase activity
GO:0044237 P cellular metabolic process
GO:0045003 P double-strand break repair via synthesis-dependent strand annealing
GO:1901291 P negative regulation of double-strand break repair via single-strand annealing
3634 O_BomoOtmSK13271_complete:A_BomoOtmSK_comp14596_c0_seq1
134bp
3635 O_BomoOtmSK13272_5prime_partial:A_BomoOtmSK_comp14597_c0_seq1
446bp
 major_facilitator_superfamily_domain-containing_protein_1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006810 P transport
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
3636 O_BomoOtmSK13273_complete:A_BomoOtmSK_comp14597_c0_seq1
281bp
 probable_palmitoyltransferase_ZDHHC24_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0019706 F protein-cysteine S-palmitoyltransferase activity
GO:0046872 F metal ion binding
3637 O_BomoOtmSK13274_complete:A_BomoOtmSK_comp14597_c0_seq2
281bp
 probable_palmitoyltransferase_ZDHHC24_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0019706 F protein-cysteine S-palmitoyltransferase activity
GO:0046872 F metal ion binding
3638 O_BomoOtmSK13275_complete:A_BomoOtmSK_comp14597_c0_seq2
132bp
 major_facilitator_superfamily_domain-containing_protein_1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006810 P transport
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
3639 O_BomoOtmSK13276_complete:A_BomoOtmSK_comp14597_c0_seq3
516bp
 major_facilitator_superfamily_domain-containing_protein_1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006810 P transport
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
3640 O_BomoOtmSK13277_complete:A_BomoOtmSK_comp14597_c0_seq3
281bp
 probable_palmitoyltransferase_ZDHHC24_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0019706 F protein-cysteine S-palmitoyltransferase activity
GO:0046872 F metal ion binding
3641 O_BomoOtmSK13278_3prime_partial:A_BomoOtmSK_comp14598_c0_seq1
134bp
 eukaryotic_translation_initiation_factor_4_gamma_3_[Bombyx_mori]
3642 O_BomoOtmSK13279_complete:A_BomoOtmSK_comp14598_c1_seq1
1075bp
 eukaryotic_translation_initiation_factor_4_gamma_3_[Bombyx_mori]
GO:0001934 P positive regulation of protein phosphorylation
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006417 P regulation of translation
GO:0007283 P spermatogenesis
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0060903 P positive regulation of meiosis I
3643 O_BomoOtmSK1327_3prime_partial:A_BomoOtmSK_comp4870_c0_seq2
129bp
3644 O_BomoOtmSK13280_complete:A_BomoOtmSK_comp14598_c1_seq1
104bp
3645 O_BomoOtmSK13281_5prime_partial:A_BomoOtmSK_comp14598_c1_seq2
1627bp
 eukaryotic_translation_initiation_factor_4_gamma_3_[Bombyx_mori]
GO:0001934 P positive regulation of protein phosphorylation
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006417 P regulation of translation
GO:0007283 P spermatogenesis
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0060903 P positive regulation of meiosis I
3646 O_BomoOtmSK13282_complete:A_BomoOtmSK_comp14598_c1_seq2
104bp
3647 O_BomoOtmSK13283_5prime_partial:A_BomoOtmSK_comp14599_c0_seq1
191bp
3648 O_BomoOtmSK13284_3prime_partial:A_BomoOtmSK_comp14599_c0_seq1
121bp
 uncharacterized_protein_LOC101739060_[Bombyx_mori]
GO:0005634 C nucleus
GO:0007275 P multicellular organism development
GO:0060693 P regulation of branching involved in salivary gland morphogenesis
3649 O_BomoOtmSK13285_complete:A_BomoOtmSK_comp14601_c0_seq1
549bp
 LOW_QUALITY_PROTEIN:_cytochrome_P450_6B1_[Bombyx_mori]
GO:0004497 F monooxygenase activity
GO:0005506 F iron ion binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 F heme binding
GO:0031090 C organelle membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070330 F aromatase activity
3650 O_BomoOtmSK13286_complete:A_BomoOtmSK_comp14602_c0_seq1
532bp
 protein_msta_[Bombyx_mori]
GO:0008168 F methyltransferase activity
GO:0010629 P negative regulation of gene expression
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0042826 F histone deacetylase binding
3651 O_BomoOtmSK13287_complete:A_BomoOtmSK_comp14602_c0_seq1
113bp
3652 O_BomoOtmSK13288_complete:A_BomoOtmSK_comp14603_c1_seq1
396bp
 traB_domain-containing_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
3653 O_BomoOtmSK13289_complete:A_BomoOtmSK_comp14603_c1_seq2
396bp
 traB_domain-containing_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
3654 O_BomoOtmSK1328_3prime_partial:A_BomoOtmSK_comp4871_c0_seq1
435bp
 rap1_GTPase-activating_protein_1_isoform_X5_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0016020 C membrane
GO:0017016 F small GTPase binding
GO:0022409 P positive regulation of cell-cell adhesion
GO:0030695 F GTPase regulator activity
GO:0042803 F protein homodimerization activity
GO:0043087 P regulation of GTPase activity
GO:0043547 P positive regulation of GTPase activity
GO:0050766 P positive regulation of phagocytosis
GO:0051056 P regulation of small GTPase mediated signal transduction
GO:1903697 P negative regulation of microvillus assembly
3655 O_BomoOtmSK13290_complete:A_BomoOtmSK_comp14605_c0_seq1
499bp
 coiled-coil_domain-containing_protein_22_homolog_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
3656 O_BomoOtmSK13291_complete:A_BomoOtmSK_comp14605_c0_seq1
440bp
 uncharacterized_protein_LOC101745964_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005840 C ribosome
GO:0030529 C ribonucleoprotein complex
GO:0070124 P mitochondrial translational initiation
GO:0070125 P mitochondrial translational elongation
3657 O_BomoOtmSK13292_complete:A_BomoOtmSK_comp14606_c1_seq2
567bp
 asparagine-rich_zinc_finger_protein_AZF1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3658 O_BomoOtmSK13293_5prime_partial:A_BomoOtmSK_comp14608_c0_seq1
1325bp
 uncharacterized_protein_LOC101742695_[Bombyx_mori]
3659 O_BomoOtmSK13294_internal:A_BomoOtmSK_comp14608_c0_seq2
1706bp
 uncharacterized_protein_LOC101742695_[Bombyx_mori]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
3660 O_BomoOtmSK13295_complete:A_BomoOtmSK_comp14608_c0_seq2
125bp
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