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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3601 O_BomoOtmSK13241_complete:A_BomoOtmSK_comp14591_c0_seq6
385bp
 endoplasmic_reticulum-Golgi_intermediate_compartment_protein_3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
3602 O_BomoOtmSK13242_complete:A_BomoOtmSK_comp14591_c0_seq6
114bp
 transcription_termination_factor_3,_mitochondrial_[Bombyx_mori]
GO:0003690 F double-stranded DNA binding
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
3603 O_BomoOtmSK13243_complete:A_BomoOtmSK_comp14591_c0_seq7
385bp
 endoplasmic_reticulum-Golgi_intermediate_compartment_protein_3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
3604 O_BomoOtmSK13244_complete:A_BomoOtmSK_comp14591_c0_seq7
338bp
 transcription_termination_factor_3,_mitochondrial_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
3605 O_BomoOtmSK13245_complete:A_BomoOtmSK_comp14591_c0_seq8
385bp
 endoplasmic_reticulum-Golgi_intermediate_compartment_protein_3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
3606 O_BomoOtmSK13246_5prime_partial:A_BomoOtmSK_comp14591_c0_seq8
123bp
 transcription_termination_factor_3,_mitochondrial_[Bombyx_mori]
GO:0003690 F double-stranded DNA binding
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
3607 O_BomoOtmSK13247_complete:A_BomoOtmSK_comp14591_c0_seq10
385bp
 endoplasmic_reticulum-Golgi_intermediate_compartment_protein_3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
3608 O_BomoOtmSK13248_complete:A_BomoOtmSK_comp14591_c0_seq10
338bp
 transcription_termination_factor_3,_mitochondrial_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
3609 O_BomoOtmSK13249_complete:A_BomoOtmSK_comp14591_c0_seq11
385bp
 endoplasmic_reticulum-Golgi_intermediate_compartment_protein_3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
3610 O_BomoOtmSK1324_complete:A_BomoOtmSK_comp4870_c0_seq1
278bp
 histone-lysine_N-methyltransferase_SETD1_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000791 C euchromatin
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0035327 C euchromatin
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0044648 P histone H3-K4 dimethylation
GO:0046427 P positive regulation of receptor signaling pathway via JAK-STAT
GO:0048188 C Set1C/COMPASS complex
GO:0051568 P histone H3-K4 methylation
GO:0080182 P histone H3-K4 trimethylation
3611 O_BomoOtmSK13250_complete:A_BomoOtmSK_comp14591_c0_seq11
114bp
 transcription_termination_factor_3,_mitochondrial_[Bombyx_mori]
GO:0003690 F double-stranded DNA binding
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
3612 O_BomoOtmSK13251_complete:A_BomoOtmSK_comp14592_c1_seq1
129bp
3613 O_BomoOtmSK13252_complete:A_BomoOtmSK_comp14592_c1_seq4
129bp
3614 O_BomoOtmSK13253_5prime_partial:A_BomoOtmSK_comp14595_c0_seq1
140bp
 fau_protein_[Bombyx_mori]
3615 O_BomoOtmSK13254_complete:A_BomoOtmSK_comp14595_c0_seq2
312bp
 Fau_protein,_partial_[Operophtera_brumata]
GO:0005575 C cellular_component
GO:0034059 P response to anoxia
3616 O_BomoOtmSK13255_5prime_partial:A_BomoOtmSK_comp14595_c0_seq2
286bp
 fau_protein_[Papilio_polytes]
GO:0005575 C cellular_component
GO:0034059 P response to anoxia
3617 O_BomoOtmSK13256_complete:A_BomoOtmSK_comp14595_c0_seq2
205bp
3618 O_BomoOtmSK13257_3prime_partial:A_BomoOtmSK_comp14595_c0_seq2
174bp
3619 O_BomoOtmSK13258_5prime_partial:A_BomoOtmSK_comp14595_c0_seq3
599bp
 PREDICTED:_protein_anoxia_up-regulated-like_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005886 C plasma membrane
GO:0008201 F heparin binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016337 P cell-cell adhesion
3620 O_BomoOtmSK13259_complete:A_BomoOtmSK_comp14595_c0_seq3
205bp
3621 O_BomoOtmSK1325_3prime_partial:A_BomoOtmSK_comp4870_c0_seq2
362bp
 histone-lysine_N-methyltransferase_SETD1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000791 C euchromatin
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0035327 C euchromatin
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0044648 P histone H3-K4 dimethylation
GO:0046427 P positive regulation of receptor signaling pathway via JAK-STAT
GO:0048188 C Set1C/COMPASS complex
GO:0051568 P histone H3-K4 methylation
GO:0080182 P histone H3-K4 trimethylation
3622 O_BomoOtmSK13260_3prime_partial:A_BomoOtmSK_comp14595_c0_seq3
174bp
3623 O_BomoOtmSK13261_complete:A_BomoOtmSK_comp14595_c0_seq4
312bp
 Fau_protein,_partial_[Operophtera_brumata]
GO:0005575 C cellular_component
GO:0034059 P response to anoxia
3624 O_BomoOtmSK13262_5prime_partial:A_BomoOtmSK_comp14595_c0_seq4
258bp
 fau_protein_[Papilio_polytes]
GO:0005575 C cellular_component
GO:0034059 P response to anoxia
3625 O_BomoOtmSK13263_complete:A_BomoOtmSK_comp14595_c0_seq4
205bp
3626 O_BomoOtmSK13264_3prime_partial:A_BomoOtmSK_comp14595_c0_seq4
146bp
3627 O_BomoOtmSK13265_5prime_partial:A_BomoOtmSK_comp14595_c0_seq5
164bp
 hypothetical_protein_RR46_08553_[Papilio_xuthus]
3628 O_BomoOtmSK13266_complete:A_BomoOtmSK_comp14595_c0_seq5
134bp
3629 O_BomoOtmSK13267_5prime_partial:A_BomoOtmSK_comp14595_c0_seq6
571bp
 PREDICTED:_protein_anoxia_up-regulated-like_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005886 C plasma membrane
GO:0008201 F heparin binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016337 P cell-cell adhesion
3630 O_BomoOtmSK13268_complete:A_BomoOtmSK_comp14595_c0_seq6
205bp
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