SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/35878
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3361 O_BomoOtmSK13025_complete:A_BomoOtmSK_comp14533_c0_seq1
131bp
 PREDICTED:_uncharacterized_protein_LOC106139967,_partial_[Amyelois_transitella]
3362 O_BomoOtmSK13026_complete:A_BomoOtmSK_comp14533_c0_seq1
127bp
 PREDICTED:_uncharacterized_protein_LOC106137419_[Amyelois_transitella]
3363 O_BomoOtmSK13027_complete:A_BomoOtmSK_comp14533_c0_seq1
103bp
3364 O_BomoOtmSK13028_3prime_partial:A_BomoOtmSK_comp14534_c0_seq1
433bp
 nuclear_pore_complex_protein_Nup98-Nup96_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000776 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0003723 F RNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0006260 P DNA replication
GO:0006405 P RNA export from nucleus
GO:0006810 P transport
GO:0008139 F nuclear localization sequence binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017056 F structural constituent of nuclear pore
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034398 P telomere tethering at nuclear periphery
GO:0034399 C nuclear periphery
GO:0042277 F peptide binding
GO:0042405 C nuclear inclusion body
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0044615 C nuclear pore nuclear basket
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
3365 O_BomoOtmSK13029_complete:A_BomoOtmSK_comp14534_c0_seq1
191bp
3366 O_BomoOtmSK1302_3prime_partial:A_BomoOtmSK_comp4853_c0_seq1
210bp
 ubiquitin_carboxyl-terminal_hydrolase_32_isoform_X2_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016020 C membrane
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
3367 O_BomoOtmSK13030_complete:A_BomoOtmSK_comp14534_c0_seq1
184bp
3368 O_BomoOtmSK13031_complete:A_BomoOtmSK_comp14535_c0_seq1
1846bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101737452_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0071837 F HMG box domain binding
3369 O_BomoOtmSK13032_complete:A_BomoOtmSK_comp14535_c0_seq2
1855bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101737452_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0071837 F HMG box domain binding
3370 O_BomoOtmSK13033_complete:A_BomoOtmSK_comp14536_c0_seq1
245bp
 methionyl-tRNA_formyltransferase,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004479 F methionyl-tRNA formyltransferase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006412 P translation
GO:0009058 P biosynthetic process
GO:0016740 F transferase activity
GO:0016742 F hydroxymethyl-, formyl- and related transferase activity
GO:0070124 P mitochondrial translational initiation
GO:0071951 P conversion of methionyl-tRNA to N-formyl-methionyl-tRNA
3371 O_BomoOtmSK13034_complete:A_BomoOtmSK_comp14536_c0_seq2
150bp
 methionyl-tRNA_formyltransferase,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004479 F methionyl-tRNA formyltransferase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006412 P translation
GO:0009058 P biosynthetic process
GO:0016740 F transferase activity
GO:0016742 F hydroxymethyl-, formyl- and related transferase activity
GO:0070124 P mitochondrial translational initiation
GO:0071951 P conversion of methionyl-tRNA to N-formyl-methionyl-tRNA
3372 O_BomoOtmSK13035_5prime_partial:A_BomoOtmSK_comp14536_c0_seq3
349bp
 methionyl-tRNA_formyltransferase,_mitochondrial_isoform_X1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004479 F methionyl-tRNA formyltransferase activity
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0009058 P biosynthetic process
GO:0016740 F transferase activity
GO:0016742 F hydroxymethyl-, formyl- and related transferase activity
GO:0071951 P conversion of methionyl-tRNA to N-formyl-methionyl-tRNA
3373 O_BomoOtmSK13036_complete:A_BomoOtmSK_comp14537_c0_seq1
1154bp
 uncharacterized_protein_LOC101742281_isoform_X2_[Bombyx_mori]
3374 O_BomoOtmSK13037_5prime_partial:A_BomoOtmSK_comp14537_c0_seq1
1140bp
 uncharacterized_protein_LOC101742281_isoform_X2_[Bombyx_mori]
3375 O_BomoOtmSK13038_complete:A_BomoOtmSK_comp14537_c0_seq1
127bp
3376 O_BomoOtmSK13039_complete:A_BomoOtmSK_comp14537_c0_seq1
103bp
3377 O_BomoOtmSK1303_3prime_partial:A_BomoOtmSK_comp4853_c0_seq2
512bp
 ubiquitin_carboxyl-terminal_hydrolase_32_isoform_X2_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016020 C membrane
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
3378 O_BomoOtmSK13040_5prime_partial:A_BomoOtmSK_comp14537_c0_seq2
1140bp
 uncharacterized_protein_LOC101742281_isoform_X2_[Bombyx_mori]
3379 O_BomoOtmSK13041_complete:A_BomoOtmSK_comp14537_c0_seq2
523bp
 uncharacterized_protein_LOC101742281_isoform_X2_[Bombyx_mori]
3380 O_BomoOtmSK13042_complete:A_BomoOtmSK_comp14537_c0_seq2
127bp
3381 O_BomoOtmSK13043_complete:A_BomoOtmSK_comp14538_c0_seq1
646bp
 translation_initiation_factor_eIF-2B_subunit_epsilon_isoform_X1_[Bombyx_mori]
GO:0001541 P ovarian follicle development
GO:0003743 F translation initiation factor activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005851 C eukaryotic translation initiation factor 2B complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0007568 P aging
GO:0009408 P response to heat
GO:0009749 P response to glucose
GO:0010226 P response to lithium ion
GO:0014002 P astrocyte development
GO:0014003 P oligodendrocyte development
GO:0021766 P hippocampus development
GO:0031369 F translation initiation factor binding
GO:0034976 P response to endoplasmic reticulum stress
GO:0035690 P cellular response to xenobiotic stimulus
GO:0042552 P myelination
GO:0043065 P positive regulation of apoptotic process
GO:0043434 P response to peptide hormone
GO:0043547 P positive regulation of GTPase activity
GO:0045727 P positive regulation of translation
GO:0045948 P positive regulation of translational initiation
GO:0048708 P astrocyte differentiation
3382 O_BomoOtmSK13044_complete:A_BomoOtmSK_comp14538_c0_seq2
513bp
 translation_initiation_factor_eIF-2B_subunit_epsilon_isoform_X1_[Bombyx_mori]
GO:0001541 P ovarian follicle development
GO:0003743 F translation initiation factor activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005851 C eukaryotic translation initiation factor 2B complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0007568 P aging
GO:0009408 P response to heat
GO:0009749 P response to glucose
GO:0010226 P response to lithium ion
GO:0014002 P astrocyte development
GO:0014003 P oligodendrocyte development
GO:0021766 P hippocampus development
GO:0031369 F translation initiation factor binding
GO:0034976 P response to endoplasmic reticulum stress
GO:0035690 P cellular response to xenobiotic stimulus
GO:0042552 P myelination
GO:0043065 P positive regulation of apoptotic process
GO:0043434 P response to peptide hormone
GO:0043547 P positive regulation of GTPase activity
GO:0045727 P positive regulation of translation
GO:0045948 P positive regulation of translational initiation
GO:0048708 P astrocyte differentiation
3383 O_BomoOtmSK13045_complete:A_BomoOtmSK_comp14541_c0_seq1
440bp
 uncharacterized_protein_LOC101736424_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005576 C extracellular region
GO:0008150 P biological_process
GO:0070062 C extracellular exosome
GO:0072562 C blood microparticle
3384 O_BomoOtmSK13046_complete:A_BomoOtmSK_comp14541_c0_seq1
111bp
3385 O_BomoOtmSK13047_complete:A_BomoOtmSK_comp14541_c0_seq2
440bp
 uncharacterized_protein_LOC101736424_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005576 C extracellular region
GO:0008150 P biological_process
GO:0070062 C extracellular exosome
GO:0072562 C blood microparticle
3386 O_BomoOtmSK13048_complete:A_BomoOtmSK_comp14541_c0_seq2
111bp
3387 O_BomoOtmSK13049_3prime_partial:A_BomoOtmSK_comp14543_c0_seq1
135bp
 ATP-dependent_DNA_helicase_Q4_[Bombyx_mori]
3388 O_BomoOtmSK1304_5prime_partial:A_BomoOtmSK_comp4853_c0_seq2
276bp
3389 O_BomoOtmSK13050_internal:A_BomoOtmSK_comp14543_c1_seq1
540bp
 ATP-dependent_DNA_helicase_Q4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000405 F bubble DNA binding
GO:0000733 P obsolete DNA strand renaturation
GO:0001501 P skeletal system development
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006284 P base-excision repair
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0008026 F helicase activity
GO:0008270 F zinc ion binding
GO:0008284 P positive regulation of cell population proliferation
GO:0009378 F four-way junction helicase activity
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0036310 F ATP-dependent DNA/DNA annealing activity
GO:0043140 F 3'-5' DNA helicase activity
GO:0043473 P pigmentation
GO:0045875 P negative regulation of sister chromatid cohesion
GO:0046872 F metal ion binding
GO:0048705 P skeletal system morphogenesis
3390 O_BomoOtmSK13051_complete:A_BomoOtmSK_comp14543_c1_seq1
146bp
previous next from show/35878

- SilkBase 1999-2023 -