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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2731 O_BomoOtmSK12459_5prime_partial:A_BomoOtmSK_comp14325_c0_seq5
167bp
 hikaru_genki_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008039 P synaptic target recognition
GO:0030154 P cell differentiation
GO:0043025 C neuronal cell body
GO:0043083 C synaptic cleft
2732 O_BomoOtmSK1245_internal:A_BomoOtmSK_comp4784_c0_seq1
263bp
 PREDICTED:_uncharacterized_protein_LOC106135477_[Amyelois_transitella]
GO:0004872 F signaling receptor activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005886 C plasma membrane
GO:0005903 C brush border
GO:0005905 C clathrin-coated pit
GO:0006766 P vitamin metabolic process
GO:0006897 P endocytosis
GO:0006898 P receptor-mediated endocytosis
GO:0007568 P aging
GO:0010165 P response to X-ray
GO:0010951 P negative regulation of endopeptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016197 P endosomal transport
GO:0016324 C apical plasma membrane
GO:0017124 F SH3 domain binding
GO:0020028 P endocytic hemoglobin import into cell
GO:0030165 F PDZ domain binding
GO:0030492 F hemoglobin binding
GO:0031100 P animal organ regeneration
GO:0031526 C brush border membrane
GO:0032403 F protein-containing complex binding
GO:0032526 P response to retinoic acid
GO:0033280 P response to vitamin D
GO:0042493 P response to xenobiotic stimulus
GO:0042562 F hormone binding
GO:0042953 P lipoprotein transport
GO:0042954 F obsolete lipoprotein transporter activity
GO:0043234 C protein-containing complex
GO:0045056 P transcytosis
GO:0045121 C membrane raft
GO:0046872 F metal ion binding
GO:0046879 P hormone secretion
GO:0050750 F low-density lipoprotein particle receptor binding
2733 O_BomoOtmSK12460_complete:A_BomoOtmSK_comp14325_c0_seq5
161bp
 hikaru_genki_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008039 P synaptic target recognition
GO:0030154 P cell differentiation
GO:0043025 C neuronal cell body
GO:0043083 C synaptic cleft
2734 O_BomoOtmSK12461_complete:A_BomoOtmSK_comp14325_c0_seq5
101bp
2735 O_BomoOtmSK12462_complete:A_BomoOtmSK_comp14328_c0_seq1
914bp
 uncharacterized_protein_LOC101739643_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000781 C chromosome, telomeric region
GO:0000784 C chromosome, telomeric region
GO:0000792 C heterochromatin
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003682 F chromatin binding
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005720 C heterochromatin
GO:0005721 C pericentric heterochromatin
GO:0006281 P DNA repair
GO:0006306 P DNA methylation
GO:0006310 P DNA recombination
GO:0006334 P nucleosome assembly
GO:0006336 P DNA replication-independent chromatin assembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007283 P spermatogenesis
GO:0010571 P positive regulation of nuclear cell cycle DNA replication
GO:0015616 F DNA translocase activity
GO:0016568 P chromatin organization
GO:0016605 C PML body
GO:0016787 F hydrolase activity
GO:0030330 P DNA damage response, signal transduction by p53 class mediator
GO:0030900 P forebrain development
GO:0031297 P replication fork processing
GO:0031933 C obsolete telomeric heterochromatin
GO:0032206 P positive regulation of telomere maintenance
GO:0032508 P DNA duplex unwinding
GO:0035064 F methylated histone binding
GO:0035128 P post-embryonic forelimb morphogenesis
GO:0035264 P multicellular organism growth
GO:0042393 F histone binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0060009 P Sertoli cell development
GO:0070087 F chromo shadow domain binding
GO:0070198 P protein localization to chromosome, telomeric region
GO:0070603 C SWI/SNF superfamily-type complex
GO:0072520 P seminiferous tubule development
GO:0072711 P cellular response to hydroxyurea
GO:1901581 P negative regulation of telomeric RNA transcription from RNA pol II promoter
GO:1901582 P positive regulation of telomeric RNA transcription from RNA pol II promoter
GO:1904908 P negative regulation of maintenance of mitotic sister chromatid cohesion, telomeric
GO:1990707 C chromosome, subtelomeric region
2736 O_BomoOtmSK12463_complete:A_BomoOtmSK_comp14328_c0_seq1
184bp
2737 O_BomoOtmSK12464_complete:A_BomoOtmSK_comp14328_c0_seq1
125bp
2738 O_BomoOtmSK12465_complete:A_BomoOtmSK_comp14329_c0_seq1
192bp
 AP-3_complex_subunit_sigma-2_isoform_X1_[Bombyx_mori]
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008089 P anterograde axonal transport
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030117 C membrane coat
GO:0030123 C AP-3 adaptor complex
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0043231 C intracellular membrane-bounded organelle
GO:0048490 P anterograde synaptic vesicle transport
GO:1904115 C axon cytoplasm
2739 O_BomoOtmSK12466_3prime_partial:A_BomoOtmSK_comp14330_c0_seq1
128bp
2740 O_BomoOtmSK12467_5prime_partial:A_BomoOtmSK_comp14330_c0_seq1
114bp
2741 O_BomoOtmSK12468_3prime_partial:A_BomoOtmSK_comp14330_c0_seq2
141bp
2742 O_BomoOtmSK12469_5prime_partial:A_BomoOtmSK_comp14330_c0_seq2
127bp
2743 O_BomoOtmSK1246_5prime_partial:A_BomoOtmSK_comp4787_c0_seq1
208bp
 scm-like_with_four_MBT_domains_protein_2_isoform_X2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007283 P spermatogenesis
GO:0016568 P chromatin organization
GO:0030154 P cell differentiation
GO:0042393 F histone binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048635 P negative regulation of muscle organ development
2744 O_BomoOtmSK12470_3prime_partial:A_BomoOtmSK_comp14330_c0_seq2
107bp
2745 O_BomoOtmSK12471_complete:A_BomoOtmSK_comp14331_c0_seq1
296bp
 transformer_2_isoform_B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000302 P response to reactive oxygen species
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
GO:0048471 C perinuclear region of cytoplasm
2746 O_BomoOtmSK12472_complete:A_BomoOtmSK_comp14331_c0_seq2
275bp
 transformer_2_isoform_F_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000302 P response to reactive oxygen species
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
GO:0048471 C perinuclear region of cytoplasm
2747 O_BomoOtmSK12473_complete:A_BomoOtmSK_comp14331_c0_seq3
274bp
 transformer_2_isoform_B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000302 P response to reactive oxygen species
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
GO:0048471 C perinuclear region of cytoplasm
2748 O_BomoOtmSK12474_complete:A_BomoOtmSK_comp14331_c0_seq3
207bp
2749 O_BomoOtmSK12475_complete:A_BomoOtmSK_comp14331_c0_seq4
279bp
 transformer_2_isoform_E_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000302 P response to reactive oxygen species
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
GO:0048471 C perinuclear region of cytoplasm
2750 O_BomoOtmSK12476_complete:A_BomoOtmSK_comp14331_c0_seq5
296bp
 transformer_2_isoform_B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000302 P response to reactive oxygen species
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
GO:0048471 C perinuclear region of cytoplasm
2751 O_BomoOtmSK12477_complete:A_BomoOtmSK_comp14331_c0_seq6
292bp
 transformer_2_isoform_C_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000302 P response to reactive oxygen species
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
GO:0048471 C perinuclear region of cytoplasm
2752 O_BomoOtmSK12478_complete:A_BomoOtmSK_comp14331_c0_seq7
270bp
 transformer_2_isoform_C_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000302 P response to reactive oxygen species
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
GO:0048471 C perinuclear region of cytoplasm
2753 O_BomoOtmSK12479_complete:A_BomoOtmSK_comp14331_c0_seq7
207bp
2754 O_BomoOtmSK1247_5prime_partial:A_BomoOtmSK_comp4787_c0_seq1
124bp
2755 O_BomoOtmSK12480_complete:A_BomoOtmSK_comp14331_c0_seq8
292bp
 transformer_2_isoform_C_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000302 P response to reactive oxygen species
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
GO:0048471 C perinuclear region of cytoplasm
2756 O_BomoOtmSK12481_5prime_partial:A_BomoOtmSK_comp14332_c0_seq1
303bp
 phosphatidylinositol_N-acetylglucosaminyltransferase_subunit_C_[Bombyx_mori]
GO:0000506 C glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex
GO:0003824 F catalytic activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006506 P GPI anchor biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016254 P preassembly of GPI anchor in ER membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0017176 F phosphatidylinositol N-acetylglucosaminyltransferase activity
2757 O_BomoOtmSK12482_complete:A_BomoOtmSK_comp14332_c0_seq1
155bp
2758 O_BomoOtmSK12483_5prime_partial:A_BomoOtmSK_comp14332_c0_seq3
175bp
2759 O_BomoOtmSK12484_5prime_partial:A_BomoOtmSK_comp14332_c0_seq3
157bp
 exocyst_complex_component_1_[Bombyx_mori]
GO:0000145 C exocyst
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0015031 P protein transport
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0098793 C presynapse
2760 O_BomoOtmSK12485_complete:A_BomoOtmSK_comp14332_c0_seq3
108bp
 PREDICTED:_uncharacterized_protein_LOC105391048_[Plutella_xylostella]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
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