SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/35878
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2701 O_BomoOtmSK12431_complete:A_BomoOtmSK_comp14314_c1_seq1
105bp
2702 O_BomoOtmSK12432_internal:A_BomoOtmSK_comp14315_c0_seq1
320bp
 uncharacterized_protein_LOC101741752_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
2703 O_BomoOtmSK12433_5prime_partial:A_BomoOtmSK_comp14315_c0_seq1
163bp
2704 O_BomoOtmSK12434_complete:A_BomoOtmSK_comp14315_c0_seq1
125bp
2705 O_BomoOtmSK12435_complete:A_BomoOtmSK_comp14316_c0_seq1
398bp
 thioredoxin_domain-containing_protein_5_homolog_[Bombyx_mori]
GO:0003756 F protein disulfide isomerase activity
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006457 P protein folding
GO:0008152 P metabolic process
GO:0016853 F isomerase activity
GO:0034976 P response to endoplasmic reticulum stress
GO:0043277 P apoptotic cell clearance
GO:0045454 P cell redox homeostasis
GO:0070062 C extracellular exosome
2706 O_BomoOtmSK12436_complete:A_BomoOtmSK_comp14318_c0_seq1
335bp
 tRNA_(adenine(37)-N6)-methyltransferase_isoform_X1_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0016430 F tRNA (adenine-N6-)-methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
2707 O_BomoOtmSK12437_complete:A_BomoOtmSK_comp14318_c0_seq1
273bp
 uncharacterized_protein_LOC101736596_[Bombyx_mori]
GO:0004563 F beta-N-acetylhexosaminidase activity
GO:0005975 P carbohydrate metabolic process
GO:0006517 P protein deglycosylation
GO:0008152 P metabolic process
GO:0016231 F beta-N-acetylglucosaminidase activity
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0030246 F carbohydrate binding
2708 O_BomoOtmSK12438_complete:A_BomoOtmSK_comp14318_c0_seq2
254bp
 tRNA_(adenine(37)-N6)-methyltransferase_isoform_X2_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0016430 F tRNA (adenine-N6-)-methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
2709 O_BomoOtmSK12439_complete:A_BomoOtmSK_comp14318_c0_seq3
432bp
 tRNA_(adenine(37)-N6)-methyltransferase_isoform_X1_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0016430 F tRNA (adenine-N6-)-methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
2710 O_BomoOtmSK1243_5prime_partial:A_BomoOtmSK_comp4782_c0_seq1
449bp
 ATPase_family_AAA_domain-containing_protein_2_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003682 F chromatin binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0031936 P obsolete negative regulation of chromatin silencing
GO:0042393 F histone binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0070062 C extracellular exosome
2711 O_BomoOtmSK12440_complete:A_BomoOtmSK_comp14318_c0_seq3
273bp
 uncharacterized_protein_LOC101736596_[Bombyx_mori]
GO:0004563 F beta-N-acetylhexosaminidase activity
GO:0005975 P carbohydrate metabolic process
GO:0006517 P protein deglycosylation
GO:0008152 P metabolic process
GO:0016231 F beta-N-acetylglucosaminidase activity
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0030246 F carbohydrate binding
2712 O_BomoOtmSK12441_complete:A_BomoOtmSK_comp14318_c0_seq5
157bp
 tRNA_(adenine(37)-N6)-methyltransferase_isoform_X1_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0016430 F tRNA (adenine-N6-)-methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
2713 O_BomoOtmSK12442_complete:A_BomoOtmSK_comp14318_c0_seq6
273bp
 uncharacterized_protein_LOC101736596_[Bombyx_mori]
GO:0004563 F beta-N-acetylhexosaminidase activity
GO:0005975 P carbohydrate metabolic process
GO:0006517 P protein deglycosylation
GO:0008152 P metabolic process
GO:0016231 F beta-N-acetylglucosaminidase activity
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0030246 F carbohydrate binding
2714 O_BomoOtmSK12443_complete:A_BomoOtmSK_comp14318_c0_seq6
155bp
 tRNA_(adenine(37)-N6)-methyltransferase_isoform_X2_[Bombyx_mori]
2715 O_BomoOtmSK12444_internal:A_BomoOtmSK_comp14319_c0_seq1
1037bp
 spectrin_alpha_chain_isoform_X5_[Bombyx_mori]
GO:0002168 P instar larval development
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0005516 F calmodulin binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005811 C lipid droplet
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0007009 P plasma membrane organization
GO:0007026 P negative regulation of microtubule depolymerization
GO:0007274 P neuromuscular synaptic transmission
GO:0007293 P germarium-derived egg chamber formation
GO:0007294 P germarium-derived oocyte fate determination
GO:0007308 P oocyte construction
GO:0007417 P central nervous system development
GO:0008017 F microtubule binding
GO:0008091 C spectrin
GO:0008092 F cytoskeletal protein binding
GO:0008302 P female germline ring canal formation, actin assembly
GO:0008360 P regulation of cell shape
GO:0016199 P axon midline choice point recognition
GO:0016323 C basolateral plasma membrane
GO:0016337 P cell-cell adhesion
GO:0030707 P ovarian follicle cell development
GO:0030721 P spectrosome organization
GO:0030727 P germarium-derived female germ-line cyst formation
GO:0031594 C neuromuscular junction
GO:0042062 P long-term strengthening of neuromuscular junction
GO:0045169 C fusome
GO:0045170 C spectrosome
GO:0045478 P fusome organization
GO:0046872 F metal ion binding
GO:0048134 P germ-line cyst formation
GO:0048790 P maintenance of presynaptic active zone structure
GO:0050807 P regulation of synapse organization
GO:0051693 P actin filament capping
GO:0060429 P epithelium development
2716 O_BomoOtmSK12445_complete:A_BomoOtmSK_comp14319_c0_seq1
238bp
2717 O_BomoOtmSK12446_5prime_partial:A_BomoOtmSK_comp14319_c0_seq1
237bp
2718 O_BomoOtmSK12447_complete:A_BomoOtmSK_comp14319_c0_seq1
100bp
2719 O_BomoOtmSK12448_internal:A_BomoOtmSK_comp14319_c0_seq2
1052bp
 spectrin_alpha_chain_isoform_X3_[Bombyx_mori]
GO:0002168 P instar larval development
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0005516 F calmodulin binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005811 C lipid droplet
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0007009 P plasma membrane organization
GO:0007026 P negative regulation of microtubule depolymerization
GO:0007274 P neuromuscular synaptic transmission
GO:0007293 P germarium-derived egg chamber formation
GO:0007294 P germarium-derived oocyte fate determination
GO:0007308 P oocyte construction
GO:0007417 P central nervous system development
GO:0008017 F microtubule binding
GO:0008091 C spectrin
GO:0008092 F cytoskeletal protein binding
GO:0008302 P female germline ring canal formation, actin assembly
GO:0008360 P regulation of cell shape
GO:0016199 P axon midline choice point recognition
GO:0016323 C basolateral plasma membrane
GO:0016337 P cell-cell adhesion
GO:0030707 P ovarian follicle cell development
GO:0030721 P spectrosome organization
GO:0030727 P germarium-derived female germ-line cyst formation
GO:0031594 C neuromuscular junction
GO:0042062 P long-term strengthening of neuromuscular junction
GO:0045169 C fusome
GO:0045170 C spectrosome
GO:0045478 P fusome organization
GO:0046872 F metal ion binding
GO:0048134 P germ-line cyst formation
GO:0048790 P maintenance of presynaptic active zone structure
GO:0050807 P regulation of synapse organization
GO:0051693 P actin filament capping
GO:0060429 P epithelium development
2720 O_BomoOtmSK12449_complete:A_BomoOtmSK_comp14319_c0_seq2
238bp
2721 O_BomoOtmSK1244_complete:A_BomoOtmSK_comp4782_c0_seq1
107bp
2722 O_BomoOtmSK12450_5prime_partial:A_BomoOtmSK_comp14319_c0_seq2
237bp
2723 O_BomoOtmSK12451_complete:A_BomoOtmSK_comp14319_c0_seq2
110bp
2724 O_BomoOtmSK12452_5prime_partial:A_BomoOtmSK_comp14319_c1_seq1
547bp
 spectrin_alpha_chain_isoform_X3_[Bombyx_mori]
GO:0002168 P instar larval development
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0005516 F calmodulin binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005811 C lipid droplet
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0007009 P plasma membrane organization
GO:0007026 P negative regulation of microtubule depolymerization
GO:0007274 P neuromuscular synaptic transmission
GO:0007293 P germarium-derived egg chamber formation
GO:0007294 P germarium-derived oocyte fate determination
GO:0007308 P oocyte construction
GO:0007417 P central nervous system development
GO:0008017 F microtubule binding
GO:0008091 C spectrin
GO:0008092 F cytoskeletal protein binding
GO:0008302 P female germline ring canal formation, actin assembly
GO:0008360 P regulation of cell shape
GO:0016199 P axon midline choice point recognition
GO:0016323 C basolateral plasma membrane
GO:0016337 P cell-cell adhesion
GO:0030707 P ovarian follicle cell development
GO:0030721 P spectrosome organization
GO:0030727 P germarium-derived female germ-line cyst formation
GO:0031594 C neuromuscular junction
GO:0042062 P long-term strengthening of neuromuscular junction
GO:0045169 C fusome
GO:0045170 C spectrosome
GO:0045478 P fusome organization
GO:0046872 F metal ion binding
GO:0048134 P germ-line cyst formation
GO:0048790 P maintenance of presynaptic active zone structure
GO:0050807 P regulation of synapse organization
GO:0051693 P actin filament capping
GO:0060429 P epithelium development
2725 O_BomoOtmSK12453_5prime_partial:A_BomoOtmSK_comp14319_c1_seq2
555bp
 spectrin_alpha_chain_isoform_X4_[Bombyx_mori]
GO:0002168 P instar larval development
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0005516 F calmodulin binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005811 C lipid droplet
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0007009 P plasma membrane organization
GO:0007026 P negative regulation of microtubule depolymerization
GO:0007274 P neuromuscular synaptic transmission
GO:0007293 P germarium-derived egg chamber formation
GO:0007294 P germarium-derived oocyte fate determination
GO:0007308 P oocyte construction
GO:0007417 P central nervous system development
GO:0008017 F microtubule binding
GO:0008091 C spectrin
GO:0008092 F cytoskeletal protein binding
GO:0008302 P female germline ring canal formation, actin assembly
GO:0008360 P regulation of cell shape
GO:0016199 P axon midline choice point recognition
GO:0016323 C basolateral plasma membrane
GO:0016337 P cell-cell adhesion
GO:0030707 P ovarian follicle cell development
GO:0030721 P spectrosome organization
GO:0030727 P germarium-derived female germ-line cyst formation
GO:0031594 C neuromuscular junction
GO:0042062 P long-term strengthening of neuromuscular junction
GO:0045169 C fusome
GO:0045170 C spectrosome
GO:0045478 P fusome organization
GO:0046872 F metal ion binding
GO:0048134 P germ-line cyst formation
GO:0048790 P maintenance of presynaptic active zone structure
GO:0050807 P regulation of synapse organization
GO:0051693 P actin filament capping
GO:0060429 P epithelium development
2726 O_BomoOtmSK12454_complete:A_BomoOtmSK_comp14322_c0_seq1
809bp
 putative_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_DHX16_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
2727 O_BomoOtmSK12455_complete:A_BomoOtmSK_comp14322_c0_seq1
112bp
 pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP22,_putative_(PRP22)_[Plasmodium_ovale_wallikeri]
2728 O_BomoOtmSK12456_complete:A_BomoOtmSK_comp14325_c0_seq1
142bp
 hikaru_genki_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008039 P synaptic target recognition
GO:0030154 P cell differentiation
GO:0043025 C neuronal cell body
GO:0043083 C synaptic cleft
2729 O_BomoOtmSK12457_5prime_partial:A_BomoOtmSK_comp14325_c0_seq3
167bp
 hikaru_genki_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008039 P synaptic target recognition
GO:0030154 P cell differentiation
GO:0043025 C neuronal cell body
GO:0043083 C synaptic cleft
2730 O_BomoOtmSK12458_5prime_partial:A_BomoOtmSK_comp14325_c0_seq4
167bp
 hikaru_genki_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008039 P synaptic target recognition
GO:0030154 P cell differentiation
GO:0043025 C neuronal cell body
GO:0043083 C synaptic cleft
previous next from show/35878

- SilkBase 1999-2023 -