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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2521 O_BomoOtmSK1226_complete:A_BomoOtmSK_comp4769_c0_seq1
124bp
2522 O_BomoOtmSK12270_5prime_partial:A_BomoOtmSK_comp14269_c0_seq2
129bp
2523 O_BomoOtmSK12271_5prime_partial:A_BomoOtmSK_comp14269_c0_seq2
112bp
 guanine_nucleotide_exchange_factor_DBS_isoform_X2_[Bombyx_mori]
GO:0002102 C podosome
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006801 P superoxide metabolic process
GO:0030054 C cell junction
GO:0035091 F phosphatidylinositol binding
GO:0042995 C cell projection
GO:0072593 P reactive oxygen species metabolic process
GO:0072675 P osteoclast fusion
2524 O_BomoOtmSK12272_internal:A_BomoOtmSK_comp14270_c0_seq1
369bp
 focadhesin_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005925 C focal adhesion
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
2525 O_BomoOtmSK12273_3prime_partial:A_BomoOtmSK_comp14273_c0_seq1
500bp
 guanine_nucleotide_exchange_factor_subunit_Rich_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003674 F molecular_function
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0007411 P axon guidance
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016023 C cytoplasmic vesicle
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0017137 F small GTPase binding
GO:0032483 P regulation of Rab protein signal transduction
GO:0034066 C Ric1-Rgp1 guanyl-nucleotide exchange factor complex
GO:0035418 P protein localization to synapse
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043234 C protein-containing complex
GO:0043547 P positive regulation of GTPase activity
GO:0045467 P R7 cell development
GO:0050808 P synapse organization
GO:0060078 P regulation of postsynaptic membrane potential
GO:1903363 P negative regulation of cellular protein catabolic process
2526 O_BomoOtmSK12274_complete:A_BomoOtmSK_comp14273_c0_seq1
177bp
2527 O_BomoOtmSK12275_5prime_partial:A_BomoOtmSK_comp14273_c0_seq1
108bp
2528 O_BomoOtmSK12276_complete:A_BomoOtmSK_comp14274_c0_seq1
218bp
 uncharacterized_protein_LOC101743364_isoform_X2_[Bombyx_mori]
2529 O_BomoOtmSK12277_complete:A_BomoOtmSK_comp14274_c0_seq2
223bp
 uncharacterized_protein_LOC101743364_isoform_X1_[Bombyx_mori]
2530 O_BomoOtmSK12278_internal:A_BomoOtmSK_comp14275_c0_seq1
276bp
 uncharacterized_protein_LOC101745243_[Bombyx_mori]
2531 O_BomoOtmSK12279_3prime_partial:A_BomoOtmSK_comp14275_c0_seq1
100bp
2532 O_BomoOtmSK1227_complete:A_BomoOtmSK_comp4769_c0_seq1
119bp
2533 O_BomoOtmSK12280_3prime_partial:A_BomoOtmSK_comp14275_c0_seq2
327bp
 uncharacterized_protein_LOC101745243_[Bombyx_mori]
GO:0005515 F protein binding
2534 O_BomoOtmSK12281_5prime_partial:A_BomoOtmSK_comp14275_c0_seq2
203bp
2535 O_BomoOtmSK12282_5prime_partial:A_BomoOtmSK_comp14275_c0_seq2
110bp
2536 O_BomoOtmSK12283_3prime_partial:A_BomoOtmSK_comp14275_c0_seq3
562bp
 uncharacterized_protein_LOC101745243_[Bombyx_mori]
GO:0005515 F protein binding
2537 O_BomoOtmSK12284_complete:A_BomoOtmSK_comp14275_c0_seq3
262bp
2538 O_BomoOtmSK12285_complete:A_BomoOtmSK_comp14276_c0_seq1
274bp
 elongation_of_very_long_chain_fatty_acids_protein_7_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0019367 P fatty acid elongation, saturated fatty acid
GO:0034626 P fatty acid elongation, polyunsaturated fatty acid
GO:0042761 P very long-chain fatty acid biosynthetic process
2539 O_BomoOtmSK12286_complete:A_BomoOtmSK_comp14276_c0_seq2
274bp
 elongation_of_very_long_chain_fatty_acids_protein_7_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0019367 P fatty acid elongation, saturated fatty acid
GO:0034626 P fatty acid elongation, polyunsaturated fatty acid
GO:0042761 P very long-chain fatty acid biosynthetic process
2540 O_BomoOtmSK12287_complete:A_BomoOtmSK_comp14277_c0_seq1
188bp
 probable_cardiolipin_synthase_(CMP-forming)_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006629 P lipid metabolic process
GO:0006754 P ATP biosynthetic process
GO:0007006 P mitochondrial membrane organization
GO:0008654 P phospholipid biosynthetic process
GO:0008808 F cardiolipin synthase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016780 F phosphotransferase activity, for other substituted phosphate groups
GO:0032049 P cardiolipin biosynthetic process
2541 O_BomoOtmSK12288_complete:A_BomoOtmSK_comp14277_c0_seq2
340bp
 probable_cardiolipin_synthase_(CMP-forming)_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006629 P lipid metabolic process
GO:0006754 P ATP biosynthetic process
GO:0007006 P mitochondrial membrane organization
GO:0008654 P phospholipid biosynthetic process
GO:0008808 F cardiolipin synthase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016780 F phosphotransferase activity, for other substituted phosphate groups
GO:0032049 P cardiolipin biosynthetic process
2542 O_BomoOtmSK12289_internal:A_BomoOtmSK_comp14280_c0_seq1
1644bp
 LOW_QUALITY_PROTEIN:_histone-lysine_N-methyltransferase_2C_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035097 C histone methyltransferase complex
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0044666 C MLL3/4 complex
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0051568 P histone H3-K4 methylation
2543 O_BomoOtmSK1228_3prime_partial:A_BomoOtmSK_comp4770_c0_seq1
402bp
 histone_acetyltransferase_KAT7,_partial_[Bombyx_mori]
2544 O_BomoOtmSK12290_5prime_partial:A_BomoOtmSK_comp14280_c0_seq1
144bp
2545 O_BomoOtmSK12291_3prime_partial:A_BomoOtmSK_comp14280_c0_seq2
2184bp
 LOW_QUALITY_PROTEIN:_histone-lysine_N-methyltransferase_2C_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035097 C histone methyltransferase complex
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0044666 C MLL3/4 complex
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0051568 P histone H3-K4 methylation
2546 O_BomoOtmSK12292_complete:A_BomoOtmSK_comp14280_c0_seq2
173bp
2547 O_BomoOtmSK12293_5prime_partial:A_BomoOtmSK_comp14280_c0_seq2
148bp
2548 O_BomoOtmSK12294_5prime_partial:A_BomoOtmSK_comp14280_c0_seq2
144bp
2549 O_BomoOtmSK12295_internal:A_BomoOtmSK_comp14280_c0_seq3
2203bp
 LOW_QUALITY_PROTEIN:_histone-lysine_N-methyltransferase_2C_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035097 C histone methyltransferase complex
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0044666 C MLL3/4 complex
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0051568 P histone H3-K4 methylation
2550 O_BomoOtmSK12296_complete:A_BomoOtmSK_comp14280_c0_seq3
173bp
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