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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2491 O_BomoOtmSK12242_complete:A_BomoOtmSK_comp14261_c1_seq8
121bp
 AGAP012256-PA,_partial_[Anopheles_gambiae_str._PEST]
2492 O_BomoOtmSK12243_complete:A_BomoOtmSK_comp14262_c0_seq1
994bp
 IQ_motif_and_SEC7_domain-containing_protein_1_isoform_X3_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008289 F lipid binding
GO:0016020 C membrane
GO:0030036 P actin cytoskeleton organization
GO:0032012 P regulation of ARF protein signal transduction
GO:0043547 P positive regulation of GTPase activity
2493 O_BomoOtmSK12244_complete:A_BomoOtmSK_comp14262_c0_seq1
168bp
2494 O_BomoOtmSK12245_complete:A_BomoOtmSK_comp14262_c0_seq1
131bp
2495 O_BomoOtmSK12246_complete:A_BomoOtmSK_comp14262_c0_seq1
109bp
2496 O_BomoOtmSK12247_3prime_partial:A_BomoOtmSK_comp14263_c0_seq1
601bp
 ubiquitin_thioesterase_trabid_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0007010 P cytoskeleton organization
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016055 P Wnt signaling pathway
GO:0016477 P cell migration
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035523 P protein K29-linked deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0070536 P protein K63-linked deubiquitination
GO:0071947 P protein deubiquitination involved in ubiquitin-dependent protein catabolic process
GO:1990168 P protein K33-linked deubiquitination
2497 O_BomoOtmSK12248_3prime_partial:A_BomoOtmSK_comp14263_c0_seq2
594bp
 ubiquitin_thioesterase_trabid_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0007010 P cytoskeleton organization
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016055 P Wnt signaling pathway
GO:0016477 P cell migration
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035523 P protein K29-linked deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0070536 P protein K63-linked deubiquitination
GO:0071947 P protein deubiquitination involved in ubiquitin-dependent protein catabolic process
GO:1990168 P protein K33-linked deubiquitination
2498 O_BomoOtmSK12249_3prime_partial:A_BomoOtmSK_comp14263_c0_seq3
601bp
 ubiquitin_thioesterase_trabid_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0007010 P cytoskeleton organization
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016055 P Wnt signaling pathway
GO:0016477 P cell migration
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035523 P protein K29-linked deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0070536 P protein K63-linked deubiquitination
GO:0071947 P protein deubiquitination involved in ubiquitin-dependent protein catabolic process
GO:1990168 P protein K33-linked deubiquitination
2499 O_BomoOtmSK1224_complete:A_BomoOtmSK_comp4769_c0_seq1
1056bp
 zinc_finger_protein_569-like_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
2500 O_BomoOtmSK12250_3prime_partial:A_BomoOtmSK_comp14263_c0_seq4
594bp
 ubiquitin_thioesterase_trabid_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0007010 P cytoskeleton organization
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016055 P Wnt signaling pathway
GO:0016477 P cell migration
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035523 P protein K29-linked deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0070536 P protein K63-linked deubiquitination
GO:0071947 P protein deubiquitination involved in ubiquitin-dependent protein catabolic process
GO:1990168 P protein K33-linked deubiquitination
2501 O_BomoOtmSK12251_complete:A_BomoOtmSK_comp14264_c0_seq1
1695bp
 uncharacterized_protein_LOC101743995_[Bombyx_mori]
GO:0000910 P cytokinesis
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006309 P apoptotic DNA fragmentation
GO:0007010 P cytoskeleton organization
GO:0016192 P vesicle-mediated transport
GO:0016568 P chromatin organization
GO:0021915 P neural tube development
GO:0043044 P chromatin remodeling
GO:0090537 C CERF complex
GO:0097194 P execution phase of apoptosis
2502 O_BomoOtmSK12252_complete:A_BomoOtmSK_comp14264_c0_seq1
288bp
 uncharacterized_protein_LOC110374219_isoform_X2_[Helicoverpa_armigera]
GO:0000910 P cytokinesis
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006309 P apoptotic DNA fragmentation
GO:0007010 P cytoskeleton organization
GO:0016192 P vesicle-mediated transport
GO:0016568 P chromatin organization
GO:0021915 P neural tube development
GO:0043044 P chromatin remodeling
GO:0090537 C CERF complex
GO:0097194 P execution phase of apoptosis
2503 O_BomoOtmSK12253_complete:A_BomoOtmSK_comp14264_c0_seq2
1695bp
 uncharacterized_protein_LOC101743995_[Bombyx_mori]
GO:0000910 P cytokinesis
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006309 P apoptotic DNA fragmentation
GO:0007010 P cytoskeleton organization
GO:0016192 P vesicle-mediated transport
GO:0016568 P chromatin organization
GO:0021915 P neural tube development
GO:0043044 P chromatin remodeling
GO:0090537 C CERF complex
GO:0097194 P execution phase of apoptosis
2504 O_BomoOtmSK12254_complete:A_BomoOtmSK_comp14264_c0_seq2
283bp
 uncharacterized_protein_LOC110374219_isoform_X3_[Helicoverpa_armigera]
GO:0000910 P cytokinesis
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006309 P apoptotic DNA fragmentation
GO:0007010 P cytoskeleton organization
GO:0016192 P vesicle-mediated transport
GO:0016568 P chromatin organization
GO:0021915 P neural tube development
GO:0043044 P chromatin remodeling
GO:0090537 C CERF complex
GO:0097194 P execution phase of apoptosis
2505 O_BomoOtmSK12255_complete:A_BomoOtmSK_comp14264_c0_seq3
1695bp
 uncharacterized_protein_LOC101743995_[Bombyx_mori]
GO:0000910 P cytokinesis
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006309 P apoptotic DNA fragmentation
GO:0007010 P cytoskeleton organization
GO:0016192 P vesicle-mediated transport
GO:0016568 P chromatin organization
GO:0021915 P neural tube development
GO:0043044 P chromatin remodeling
GO:0090537 C CERF complex
GO:0097194 P execution phase of apoptosis
2506 O_BomoOtmSK12256_complete:A_BomoOtmSK_comp14264_c0_seq3
288bp
 uncharacterized_protein_LOC110374219_isoform_X2_[Helicoverpa_armigera]
GO:0000910 P cytokinesis
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006309 P apoptotic DNA fragmentation
GO:0007010 P cytoskeleton organization
GO:0016192 P vesicle-mediated transport
GO:0016568 P chromatin organization
GO:0021915 P neural tube development
GO:0043044 P chromatin remodeling
GO:0090537 C CERF complex
GO:0097194 P execution phase of apoptosis
2507 O_BomoOtmSK12257_5prime_partial:A_BomoOtmSK_comp14265_c0_seq1
168bp
 hypothetical_protein_2_-_silkworm_transposon_mag
2508 O_BomoOtmSK12258_5prime_partial:A_BomoOtmSK_comp14266_c0_seq1
273bp
 eukaryotic_translation_initiation_factor_4H_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0048471 C perinuclear region of cytoplasm
2509 O_BomoOtmSK12259_complete:A_BomoOtmSK_comp14266_c0_seq1
128bp
2510 O_BomoOtmSK1225_complete:A_BomoOtmSK_comp4769_c0_seq1
178bp
2511 O_BomoOtmSK12260_complete:A_BomoOtmSK_comp14266_c0_seq1
119bp
2512 O_BomoOtmSK12261_complete:A_BomoOtmSK_comp14267_c0_seq1
280bp
 steroid_receptor_seven-up,_isoforms_B/C_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0001752 P compound eye photoreceptor fate commitment
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0004872 F signaling receptor activity
GO:0004879 F nuclear receptor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007270 P neuron-neuron synaptic transmission
GO:0007417 P central nervous system development
GO:0007419 P ventral cord development
GO:0007462 P R1/R6 cell fate commitment
GO:0007464 P R3/R4 cell fate commitment
GO:0007465 P R7 cell fate commitment
GO:0007503 P fat body development
GO:0007507 P heart development
GO:0007510 P cardioblast cell fate determination
GO:0007601 P visual perception
GO:0008270 F zinc ion binding
GO:0010906 P regulation of glucose metabolic process
GO:0014019 P neuroblast development
GO:0021782 P glial cell development
GO:0030522 P intracellular receptor signaling pathway
GO:0042331 P phototaxis
GO:0042803 F protein homodimerization activity
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0046530 P photoreceptor cell differentiation
GO:0046872 F metal ion binding
GO:0046982 F protein heterodimerization activity
GO:0048749 P compound eye development
GO:0050896 P response to stimulus
GO:0061331 P epithelial cell proliferation involved in Malpighian tubule morphogenesis
2513 O_BomoOtmSK12262_complete:A_BomoOtmSK_comp14267_c0_seq1
205bp
 nuclear_receptor_subfamily_2,_group_F,_member_1_[Rattus_norvegicus]
2514 O_BomoOtmSK12263_complete:A_BomoOtmSK_comp14267_c0_seq1
110bp
 hypothetical_protein_X975_26569,_partial_[Stegodyphus_mimosarum]
2515 O_BomoOtmSK12264_complete:A_BomoOtmSK_comp14268_c0_seq1
1396bp
 probable_multidrug_resistance-associated_protein_lethal(2)03659_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0055085 P transmembrane transport
2516 O_BomoOtmSK12265_complete:A_BomoOtmSK_comp14268_c0_seq1
198bp
2517 O_BomoOtmSK12266_complete:A_BomoOtmSK_comp14268_c0_seq1
132bp
2518 O_BomoOtmSK12267_complete:A_BomoOtmSK_comp14268_c0_seq1
119bp
2519 O_BomoOtmSK12268_complete:A_BomoOtmSK_comp14268_c0_seq1
105bp
2520 O_BomoOtmSK12269_complete:A_BomoOtmSK_comp14268_c0_seq1
100bp
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