SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/35878
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2131 O_BomoOtmSK11919_5prime_partial:A_BomoOtmSK_comp14114_c0_seq1
153bp
2132 O_BomoOtmSK1191_complete:A_BomoOtmSK_comp4722_c0_seq1
164bp
2133 O_BomoOtmSK11920_complete:A_BomoOtmSK_comp14115_c0_seq1
491bp
 atlastin_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0007029 P endoplasmic reticulum organization
GO:0007030 P Golgi organization
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0042802 F identical protein binding
GO:0051260 P protein homooligomerization
2134 O_BomoOtmSK11921_complete:A_BomoOtmSK_comp14115_c0_seq2
771bp
 atlastin_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0007029 P endoplasmic reticulum organization
GO:0007030 P Golgi organization
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0042802 F identical protein binding
GO:0051260 P protein homooligomerization
2135 O_BomoOtmSK11922_complete:A_BomoOtmSK_comp14117_c0_seq2
825bp
 kinesin-like_protein_costa_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007018 P microtubule-based movement
GO:0007228 P positive regulation of hh target transcription factor activity
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
2136 O_BomoOtmSK11923_complete:A_BomoOtmSK_comp14119_c0_seq1
408bp
 uncharacterized_protein_LOC110376076_isoform_X1_[Helicoverpa_armigera]
2137 O_BomoOtmSK11924_complete:A_BomoOtmSK_comp14119_c0_seq1
108bp
2138 O_BomoOtmSK11925_complete:A_BomoOtmSK_comp14120_c0_seq1
266bp
 E3_ubiquitin-protein_ligase_RING1_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0007062 P sister chromatid cohesion
GO:0007275 P multicellular organism development
GO:0007419 P ventral cord development
GO:0008270 F zinc ion binding
GO:0008278 C cohesin complex
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0022008 P neurogenesis
GO:0030708 P germarium-derived female germ-line cyst encapsulation
GO:0030713 P ovarian follicle cell stalk formation
GO:0031519 C PcG protein complex
GO:0035102 C PRC1 complex
GO:0035518 P histone H2A monoubiquitination
GO:0045498 P sex comb development
GO:0046872 F metal ion binding
GO:0051321 P meiotic cell cycle
2139 O_BomoOtmSK11926_complete:A_BomoOtmSK_comp14120_c0_seq1
131bp
 E3_ubiquitin-protein_ligase_RING1_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0007062 P sister chromatid cohesion
GO:0007275 P multicellular organism development
GO:0007419 P ventral cord development
GO:0008270 F zinc ion binding
GO:0008278 C cohesin complex
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0022008 P neurogenesis
GO:0030708 P germarium-derived female germ-line cyst encapsulation
GO:0030713 P ovarian follicle cell stalk formation
GO:0031519 C PcG protein complex
GO:0035102 C PRC1 complex
GO:0035518 P histone H2A monoubiquitination
GO:0045498 P sex comb development
GO:0046872 F metal ion binding
GO:0051321 P meiotic cell cycle
2140 O_BomoOtmSK11927_complete:A_BomoOtmSK_comp14122_c0_seq1
216bp
2141 O_BomoOtmSK11928_complete:A_BomoOtmSK_comp14122_c0_seq1
154bp
 zinc_finger_protein_773_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
2142 O_BomoOtmSK11929_5prime_partial:A_BomoOtmSK_comp14122_c0_seq1
152bp
2143 O_BomoOtmSK1192_complete:A_BomoOtmSK_comp4722_c0_seq1
118bp
2144 O_BomoOtmSK11930_complete:A_BomoOtmSK_comp14122_c0_seq3
205bp
2145 O_BomoOtmSK11931_5prime_partial:A_BomoOtmSK_comp14122_c0_seq3
152bp
2146 O_BomoOtmSK11932_complete:A_BomoOtmSK_comp14123_c0_seq1
197bp
 regulator_of_G-protein_signaling_19_isoform_X1_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005802 C trans-Golgi network
GO:0005881 C cytoplasmic microtubule
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0006355 P regulation of transcription, DNA-templated
GO:0008013 F beta-catenin binding
GO:0008219 P cell death
GO:0009950 P dorsal/ventral axis specification
GO:0009968 P negative regulation of signal transduction
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0019901 F protein kinase binding
GO:0030154 P cell differentiation
GO:0030877 C beta-catenin destruction complex
GO:0035412 P regulation of canonical Wnt signaling pathway
GO:0043547 P positive regulation of GTPase activity
GO:0070016 F armadillo repeat domain binding
GO:0071407 P cellular response to organic cyclic compound
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0090244 P Wnt signaling pathway involved in somitogenesis
2147 O_BomoOtmSK11933_5prime_partial:A_BomoOtmSK_comp14123_c0_seq1
144bp
2148 O_BomoOtmSK11934_5prime_partial:A_BomoOtmSK_comp14123_c0_seq1
141bp
 hypothetical_protein_ALC57_10797_[Trachymyrmex_cornetzi]
2149 O_BomoOtmSK11935_complete:A_BomoOtmSK_comp14123_c0_seq1
114bp
2150 O_BomoOtmSK11936_complete:A_BomoOtmSK_comp14124_c0_seq1
130bp
 mitochondrial_ornithine_transporter_1_isoform_X2_[Bombyx_mori]
GO:0000050 P urea cycle
GO:0000064 F L-ornithine transmembrane transporter activity
GO:0000066 P mitochondrial L-ornithine transmembrane transport
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006520 P cellular amino acid metabolic process
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:1903352 P L-ornithine transmembrane transport
2151 O_BomoOtmSK11937_complete:A_BomoOtmSK_comp14124_c0_seq2
305bp
 mitochondrial_ornithine_transporter_1_isoform_X1_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
2152 O_BomoOtmSK11938_complete:A_BomoOtmSK_comp14124_c0_seq3
305bp
 mitochondrial_ornithine_transporter_1_isoform_X1_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
2153 O_BomoOtmSK11939_complete:A_BomoOtmSK_comp14127_c0_seq1
296bp
 mitochondrial_carrier_homolog_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0043065 P positive regulation of apoptotic process
2154 O_BomoOtmSK1193_complete:A_BomoOtmSK_comp4726_c0_seq1
463bp
 TLD_domain-containing_protein_1_[Bombyx_mori]
2155 O_BomoOtmSK11940_3prime_partial:A_BomoOtmSK_comp14128_c0_seq1
220bp
 tRNA:m(4)X_modification_enzyme_TRM13_homolog_isoform_X1_[Bombyx_mori]
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0008175 F tRNA methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
GO:0046872 F metal ion binding
2156 O_BomoOtmSK11941_3prime_partial:A_BomoOtmSK_comp14128_c0_seq3
162bp
 tRNA:m(4)X_modification_enzyme_TRM13_homolog_isoform_X3_[Bombyx_mori]
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0008175 F tRNA methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
GO:0046872 F metal ion binding
2157 O_BomoOtmSK11942_5prime_partial:A_BomoOtmSK_comp14129_c0_seq1
673bp
 long-chain-fatty-acid--CoA_ligase_5_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001676 P long-chain fatty acid metabolic process
GO:0003824 F catalytic activity
GO:0004467 F long-chain fatty acid-CoA ligase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005743 C mitochondrial inner membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016874 F ligase activity
GO:0035338 P long-chain fatty-acyl-CoA biosynthetic process
GO:2001236 P regulation of extrinsic apoptotic signaling pathway
2158 O_BomoOtmSK11943_3prime_partial:A_BomoOtmSK_comp14129_c0_seq1
101bp
2159 O_BomoOtmSK11944_complete:A_BomoOtmSK_comp14129_c0_seq2
660bp
 long-chain-fatty-acid--CoA_ligase_5_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001676 P long-chain fatty acid metabolic process
GO:0003824 F catalytic activity
GO:0004467 F long-chain fatty acid-CoA ligase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005743 C mitochondrial inner membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016874 F ligase activity
GO:0035338 P long-chain fatty-acyl-CoA biosynthetic process
GO:2001236 P regulation of extrinsic apoptotic signaling pathway
2160 O_BomoOtmSK11945_5prime_partial:A_BomoOtmSK_comp14130_c0_seq1
301bp
 tudor_domain-containing_protein_7_isoform_X2_[Bombyx_mori]
GO:0002089 P lens morphogenesis in camera-type eye
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005737 C cytoplasm
GO:0007283 P spermatogenesis
GO:0010608 P posttranscriptional regulation of gene expression
GO:0030154 P cell differentiation
GO:0035770 C ribonucleoprotein granule
GO:0070306 P lens fiber cell differentiation
previous next from show/35878

- SilkBase 1999-2023 -