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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2041 O_BomoOtmSK11838_complete:A_BomoOtmSK_comp14086_c0_seq1
315bp
 paramyosin,_short_form-like_[Bombyx_mori]
GO:0003774 F cytoskeletal motor activity
GO:0005737 C cytoplasm
GO:0005863 C striated muscle myosin thick filament
GO:0007498 P mesoderm development
GO:0008152 P metabolic process
GO:0008307 F structural constituent of muscle
GO:0016459 C myosin complex
GO:0030016 C myofibril
GO:0030239 P myofibril assembly
GO:0032982 C myosin filament
2042 O_BomoOtmSK11839_5prime_partial:A_BomoOtmSK_comp14086_c0_seq2
139bp
 paramyosin,_short_form-like_[Bombyx_mori]
2043 O_BomoOtmSK1183_complete:A_BomoOtmSK_comp4710_c0_seq1
128bp
2044 O_BomoOtmSK11840_3prime_partial:A_BomoOtmSK_comp14088_c0_seq1
314bp
 uncharacterized_protein_LOC101736359_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005840 C ribosome
GO:0006412 P translation
GO:0015934 C large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070124 P mitochondrial translational initiation
GO:0070125 P mitochondrial translational elongation
2045 O_BomoOtmSK11841_complete:A_BomoOtmSK_comp14088_c0_seq1
121bp
2046 O_BomoOtmSK11842_3prime_partial:A_BomoOtmSK_comp14088_c0_seq2
224bp
 uncharacterized_protein_LOC101736359_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005840 C ribosome
GO:0006412 P translation
GO:0015934 C large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070124 P mitochondrial translational initiation
GO:0070125 P mitochondrial translational elongation
2047 O_BomoOtmSK11843_complete:A_BomoOtmSK_comp14088_c0_seq2
121bp
2048 O_BomoOtmSK11844_complete:A_BomoOtmSK_comp14088_c0_seq3
258bp
 uncharacterized_protein_LOC101736359_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005840 C ribosome
GO:0006412 P translation
GO:0015934 C large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070124 P mitochondrial translational initiation
GO:0070125 P mitochondrial translational elongation
2049 O_BomoOtmSK11845_complete:A_BomoOtmSK_comp14088_c0_seq3
121bp
2050 O_BomoOtmSK11846_complete:A_BomoOtmSK_comp14088_c0_seq4
348bp
 uncharacterized_protein_LOC101736359_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005840 C ribosome
GO:0006412 P translation
GO:0015934 C large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070124 P mitochondrial translational initiation
GO:0070125 P mitochondrial translational elongation
2051 O_BomoOtmSK11847_complete:A_BomoOtmSK_comp14088_c0_seq4
121bp
2052 O_BomoOtmSK11848_3prime_partial:A_BomoOtmSK_comp14089_c0_seq1
222bp
 tyrosine-protein_kinase_CSK_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002119 P nematode larval development
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004715 F non-membrane spanning protein tyrosine kinase activity
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0006468 P protein phosphorylation
GO:0009792 P embryo development ending in birth or egg hatching
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0030536 P larval feeding behavior
GO:0043050 P pharyngeal pumping
GO:0046872 F metal ion binding
GO:0048747 P muscle cell development
2053 O_BomoOtmSK11849_3prime_partial:A_BomoOtmSK_comp14089_c0_seq2
262bp
 tyrosine-protein_kinase_CSK_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002119 P nematode larval development
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004715 F non-membrane spanning protein tyrosine kinase activity
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0006468 P protein phosphorylation
GO:0009792 P embryo development ending in birth or egg hatching
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0030536 P larval feeding behavior
GO:0043050 P pharyngeal pumping
GO:0046872 F metal ion binding
GO:0048747 P muscle cell development
2054 O_BomoOtmSK1184_3prime_partial:A_BomoOtmSK_comp4719_c0_seq1
146bp
 Usher_syndrome_type-1G_protein_homolog_[Bombyx_mori]
GO:0001917 C photoreceptor inner segment
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0007605 P sensory perception of sound
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0030507 F spectrin binding
GO:0032391 C photoreceptor connecting cilium
GO:0036064 C ciliary basal body
GO:0042472 P inner ear morphogenesis
GO:0042803 F protein homodimerization activity
GO:0045494 P photoreceptor cell maintenance
GO:0050953 P sensory perception of light stimulus
GO:0050957 P equilibrioception
GO:0060113 P inner ear receptor cell differentiation
GO:0060122 P inner ear receptor cell stereocilium organization
2055 O_BomoOtmSK11850_complete:A_BomoOtmSK_comp14090_c0_seq1
790bp
 PREDICTED:_uncharacterized_protein_LOC106719761_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
2056 O_BomoOtmSK11851_complete:A_BomoOtmSK_comp14090_c0_seq1
352bp
 PREDICTED:_uncharacterized_protein_LOC106713295_[Papilio_machaon]
2057 O_BomoOtmSK11852_complete:A_BomoOtmSK_comp14090_c0_seq1
265bp
2058 O_BomoOtmSK11853_complete:A_BomoOtmSK_comp14091_c0_seq1
291bp
 protein_ENL_isoform_X1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007379 P segment specification
GO:0008023 C transcription elongation factor complex
GO:0009952 P anterior/posterior pattern specification
GO:0070062 C extracellular exosome
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:2000096 P positive regulation of Wnt signaling pathway, planar cell polarity pathway
2059 O_BomoOtmSK11854_complete:A_BomoOtmSK_comp14091_c0_seq1
106bp
2060 O_BomoOtmSK11855_complete:A_BomoOtmSK_comp14091_c0_seq2
287bp
 protein_AF-9_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007379 P segment specification
GO:0008023 C transcription elongation factor complex
GO:0009952 P anterior/posterior pattern specification
GO:0070062 C extracellular exosome
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:2000096 P positive regulation of Wnt signaling pathway, planar cell polarity pathway
2061 O_BomoOtmSK11856_complete:A_BomoOtmSK_comp14091_c0_seq2
106bp
2062 O_BomoOtmSK11857_complete:A_BomoOtmSK_comp14091_c0_seq3
291bp
 protein_ENL_isoform_X1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007379 P segment specification
GO:0008023 C transcription elongation factor complex
GO:0009952 P anterior/posterior pattern specification
GO:0070062 C extracellular exosome
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:2000096 P positive regulation of Wnt signaling pathway, planar cell polarity pathway
2063 O_BomoOtmSK11858_complete:A_BomoOtmSK_comp14091_c0_seq3
106bp
2064 O_BomoOtmSK11859_complete:A_BomoOtmSK_comp14091_c0_seq4
287bp
 protein_AF-9_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007379 P segment specification
GO:0008023 C transcription elongation factor complex
GO:0009952 P anterior/posterior pattern specification
GO:0070062 C extracellular exosome
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:2000096 P positive regulation of Wnt signaling pathway, planar cell polarity pathway
2065 O_BomoOtmSK1185_3prime_partial:A_BomoOtmSK_comp4719_c0_seq2
362bp
 Usher_syndrome_type-1G_protein_homolog_[Bombyx_mori]
GO:0001917 C photoreceptor inner segment
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0007605 P sensory perception of sound
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0030507 F spectrin binding
GO:0032391 C photoreceptor connecting cilium
GO:0036064 C ciliary basal body
GO:0042472 P inner ear morphogenesis
GO:0042803 F protein homodimerization activity
GO:0045494 P photoreceptor cell maintenance
GO:0050953 P sensory perception of light stimulus
GO:0050957 P equilibrioception
GO:0060113 P inner ear receptor cell differentiation
GO:0060122 P inner ear receptor cell stereocilium organization
2066 O_BomoOtmSK11860_complete:A_BomoOtmSK_comp14091_c0_seq4
106bp
2067 O_BomoOtmSK11861_complete:A_BomoOtmSK_comp14093_c0_seq1
113bp
2068 O_BomoOtmSK11862_complete:A_BomoOtmSK_comp14093_c0_seq2
207bp
 PEST_proteolytic_signal-containing_nuclear_protein_[Bombyx_mori]
GO:0005634 C nucleus
GO:0007049 P cell cycle
GO:0016567 P protein ubiquitination
2069 O_BomoOtmSK11863_3prime_partial:A_BomoOtmSK_comp14094_c0_seq1
424bp
 PREDICTED:_cyclin-dependent_kinase_14_isoform_X1_[Papilio_xuthus]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000166 F nucleotide binding
GO:0000308 C cytoplasmic cyclin-dependent protein kinase holoenzyme complex
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004693 F cyclin-dependent protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030332 F cyclin binding
GO:0051301 P cell division
GO:0051726 P regulation of cell cycle
GO:0060828 P regulation of canonical Wnt signaling pathway
2070 O_BomoOtmSK11864_complete:A_BomoOtmSK_comp14095_c0_seq1
1242bp
 golgin_subfamily_A_member_4_[Bombyx_mori]
GO:0000042 P protein localization to Golgi apparatus
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005829 C cytosol
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0043001 P Golgi to plasma membrane protein transport
GO:0043231 C intracellular membrane-bounded organelle
GO:0045773 P positive regulation of axon extension
GO:0051020 F GTPase binding
GO:0070062 C extracellular exosome
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