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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2011 O_BomoOtmSK11810_complete:A_BomoOtmSK_comp14069_c0_seq2
774bp
 FYVE,_RhoGEF_and_PH_domain-containing_protein_3_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0035023 P regulation of Rho protein signal transduction
GO:0090630 P activation of GTPase activity
2012 O_BomoOtmSK11811_5prime_partial:A_BomoOtmSK_comp14070_c0_seq1
598bp
 WD_repeat-containing_protein_44_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0048471 C perinuclear region of cytoplasm
2013 O_BomoOtmSK11812_3prime_partial:A_BomoOtmSK_comp14070_c0_seq1
147bp
2014 O_BomoOtmSK11813_5prime_partial:A_BomoOtmSK_comp14070_c0_seq2
624bp
 WD_repeat-containing_protein_44_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0048471 C perinuclear region of cytoplasm
2015 O_BomoOtmSK11814_internal:A_BomoOtmSK_comp14071_c0_seq1
267bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
2016 O_BomoOtmSK11815_3prime_partial:A_BomoOtmSK_comp14071_c0_seq2
142bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
2017 O_BomoOtmSK11816_3prime_partial:A_BomoOtmSK_comp14072_c0_seq2
113bp
 DNA_repair_protein_XRCC1_isoform_X3_[Bombyx_mori]
GO:0000012 P single strand break repair
GO:0000724 P double-strand break repair via homologous recombination
GO:0001666 P response to hypoxia
GO:0003684 F damaged DNA binding
GO:0003909 F DNA ligase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006284 P base-excision repair
GO:0006288 P base-excision repair, DNA ligation
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006974 P cellular response to DNA damage stimulus
GO:0010033 P response to organic substance
GO:0019899 F enzyme binding
GO:0042493 P response to xenobiotic stimulus
2018 O_BomoOtmSK11817_complete:A_BomoOtmSK_comp14074_c0_seq1
641bp
 71_kDa_protein_[Bombyx_mori]
2019 O_BomoOtmSK11818_complete:A_BomoOtmSK_comp14074_c0_seq1
107bp
2020 O_BomoOtmSK11819_complete:A_BomoOtmSK_comp14074_c0_seq2
528bp
 71_kDa_protein_isoform_X2_[Bombyx_mori]
2021 O_BomoOtmSK1181_complete:A_BomoOtmSK_comp4710_c0_seq1
504bp
 facilitated_trehalose_transporter_Tret1_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
2022 O_BomoOtmSK11820_complete:A_BomoOtmSK_comp14075_c0_seq1
780bp
 transcription_initiation_factor_TFIID_subunit_4_isoform_X6_[Bombyx_mori]
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0001092 F TFIIA-class transcription factor complex binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005669 C transcription factor TFIID complex
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0007517 P muscle organ development
GO:0008134 F transcription factor binding
GO:0022008 P neurogenesis
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0048813 P dendrite morphogenesis
GO:0051123 P RNA polymerase II preinitiation complex assembly
2023 O_BomoOtmSK11821_complete:A_BomoOtmSK_comp14075_c0_seq2
835bp
 transcription_initiation_factor_TFIID_subunit_4_isoform_X4_[Bombyx_mori]
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0001092 F TFIIA-class transcription factor complex binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005669 C transcription factor TFIID complex
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0007517 P muscle organ development
GO:0008134 F transcription factor binding
GO:0022008 P neurogenesis
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0048813 P dendrite morphogenesis
GO:0051123 P RNA polymerase II preinitiation complex assembly
2024 O_BomoOtmSK11822_5prime_partial:A_BomoOtmSK_comp14078_c0_seq1
110bp
 piggyBac_transposable_element-derived_protein_4_[Bombyx_mori]
2025 O_BomoOtmSK11823_5prime_partial:A_BomoOtmSK_comp14078_c0_seq3
110bp
 piggyBac_transposable_element-derived_protein_4_[Bombyx_mori]
2026 O_BomoOtmSK11824_complete:A_BomoOtmSK_comp14079_c0_seq1
169bp
 sterol_regulatory_element-binding_protein_1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000139 C Golgi membrane
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006629 P lipid metabolic process
GO:0008022 F protein C-terminus binding
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0009267 P cellular response to starvation
GO:0010886 P positive regulation of cholesterol storage
GO:0012507 C ER to Golgi transport vesicle membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031410 C cytoplasmic vesicle
GO:0032937 C SREBP-SCAP-Insig complex
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046983 F protein dimerization activity
GO:0055098 P cellular response to low-density lipoprotein particle stimulus
GO:0070888 F E-box binding
GO:0072368 P obsolete regulation of lipid transport by negative regulation of transcription from RNA polymerase II promoter
GO:0090370 P negative regulation of cholesterol efflux
GO:1903146 P regulation of autophagy of mitochondrion
GO:1903955 P positive regulation of protein targeting to mitochondrion
GO:2000188 P cholesterol homeostasis
2027 O_BomoOtmSK11825_complete:A_BomoOtmSK_comp14079_c0_seq2
1067bp
 sterol_regulatory_element-binding_protein_1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000139 C Golgi membrane
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000982 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003062 P regulation of heart rate by chemical signal
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006629 P lipid metabolic process
GO:0007568 P aging
GO:0007623 P circadian rhythm
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008286 P insulin receptor signaling pathway
GO:0008610 P lipid biosynthetic process
GO:0009267 P cellular response to starvation
GO:0009749 P response to glucose
GO:0010867 P positive regulation of triglyceride biosynthetic process
GO:0012507 C ER to Golgi transport vesicle membrane
GO:0014070 P response to organic cyclic compound
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019217 P regulation of fatty acid metabolic process
GO:0019901 F protein kinase binding
GO:0030324 P lung development
GO:0031065 P positive regulation of histone deacetylation
GO:0031410 C cytoplasmic vesicle
GO:0031647 P regulation of protein stability
GO:0032094 P response to food
GO:0032403 F protein-containing complex binding
GO:0032526 P response to retinoic acid
GO:0032570 P response to progesterone
GO:0032810 F sterol response element binding
GO:0032869 P cellular response to insulin stimulus
GO:0033762 P response to glucagon
GO:0033993 P response to lipid
GO:0042493 P response to xenobiotic stimulus
GO:0042789 P mRNA transcription by RNA polymerase II
GO:0043231 C intracellular membrane-bounded organelle
GO:0043234 C protein-containing complex
GO:0043434 P response to peptide hormone
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045444 P fat cell differentiation
GO:0045542 P positive regulation of cholesterol biosynthetic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046676 P negative regulation of insulin secretion
GO:0046983 F protein dimerization activity
GO:0050796 P regulation of insulin secretion
GO:0051591 P response to cAMP
GO:0070542 P response to fatty acid
GO:0071398 P cellular response to fatty acid
GO:1903146 P regulation of autophagy of mitochondrion
GO:1903214 P regulation of protein targeting to mitochondrion
2028 O_BomoOtmSK11826_complete:A_BomoOtmSK_comp14079_c0_seq2
103bp
2029 O_BomoOtmSK11827_complete:A_BomoOtmSK_comp14079_c0_seq2
101bp
2030 O_BomoOtmSK11828_complete:A_BomoOtmSK_comp14079_c0_seq3
951bp
 sterol_regulatory_element-binding_protein_1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000139 C Golgi membrane
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000982 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003062 P regulation of heart rate by chemical signal
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006629 P lipid metabolic process
GO:0007568 P aging
GO:0007623 P circadian rhythm
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008286 P insulin receptor signaling pathway
GO:0008610 P lipid biosynthetic process
GO:0009267 P cellular response to starvation
GO:0009749 P response to glucose
GO:0010867 P positive regulation of triglyceride biosynthetic process
GO:0012507 C ER to Golgi transport vesicle membrane
GO:0014070 P response to organic cyclic compound
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019217 P regulation of fatty acid metabolic process
GO:0019901 F protein kinase binding
GO:0030324 P lung development
GO:0031065 P positive regulation of histone deacetylation
GO:0031410 C cytoplasmic vesicle
GO:0031647 P regulation of protein stability
GO:0032094 P response to food
GO:0032403 F protein-containing complex binding
GO:0032526 P response to retinoic acid
GO:0032570 P response to progesterone
GO:0032810 F sterol response element binding
GO:0032869 P cellular response to insulin stimulus
GO:0033762 P response to glucagon
GO:0033993 P response to lipid
GO:0042493 P response to xenobiotic stimulus
GO:0042789 P mRNA transcription by RNA polymerase II
GO:0043231 C intracellular membrane-bounded organelle
GO:0043234 C protein-containing complex
GO:0043434 P response to peptide hormone
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045444 P fat cell differentiation
GO:0045542 P positive regulation of cholesterol biosynthetic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046676 P negative regulation of insulin secretion
GO:0046983 F protein dimerization activity
GO:0050796 P regulation of insulin secretion
GO:0051591 P response to cAMP
GO:0070542 P response to fatty acid
GO:0071398 P cellular response to fatty acid
GO:1903146 P regulation of autophagy of mitochondrion
GO:1903214 P regulation of protein targeting to mitochondrion
2031 O_BomoOtmSK11829_complete:A_BomoOtmSK_comp14079_c0_seq3
103bp
2032 O_BomoOtmSK1182_complete:A_BomoOtmSK_comp4710_c0_seq1
169bp
2033 O_BomoOtmSK11830_complete:A_BomoOtmSK_comp14079_c0_seq3
101bp
2034 O_BomoOtmSK11831_complete:A_BomoOtmSK_comp14079_c0_seq5
104bp
 putative_sterol_regulatory_element-binding_protein_1_[Operophtera_brumata]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000139 C Golgi membrane
GO:0000247 F C-8 sterol isomerase activity
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006629 P lipid metabolic process
GO:0008022 F protein C-terminus binding
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0009267 P cellular response to starvation
GO:0010886 P positive regulation of cholesterol storage
GO:0012507 C ER to Golgi transport vesicle membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031410 C cytoplasmic vesicle
GO:0032937 C SREBP-SCAP-Insig complex
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046983 F protein dimerization activity
GO:0055098 P cellular response to low-density lipoprotein particle stimulus
GO:0070888 F E-box binding
GO:0071499 P cellular response to laminar fluid shear stress
GO:0072368 P obsolete regulation of lipid transport by negative regulation of transcription from RNA polymerase II promoter
GO:0090370 P negative regulation of cholesterol efflux
GO:1903146 P regulation of autophagy of mitochondrion
GO:1903955 P positive regulation of protein targeting to mitochondrion
GO:2000188 P cholesterol homeostasis
2035 O_BomoOtmSK11832_complete:A_BomoOtmSK_comp14080_c0_seq1
177bp
 PAB-dependent_poly(A)-specific_ribonuclease_subunit_PAN2_isoform_X3_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 C P-body
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0016787 F hydrolase activity
GO:0031251 C PAN complex
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
2036 O_BomoOtmSK11833_5prime_partial:A_BomoOtmSK_comp14080_c0_seq1
158bp
2037 O_BomoOtmSK11834_complete:A_BomoOtmSK_comp14081_c0_seq1
392bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Amyelois_transitella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
2038 O_BomoOtmSK11835_complete:A_BomoOtmSK_comp14082_c0_seq1
266bp
 leucine_zipper_protein_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0008150 P biological_process
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0032182 F ubiquitin-like protein binding
GO:0045116 P protein neddylation
GO:0051443 P positive regulation of ubiquitin-protein transferase activity
GO:0097602 F cullin family protein binding
2039 O_BomoOtmSK11836_complete:A_BomoOtmSK_comp14084_c0_seq1
185bp
 zinc_finger_protein_528_[Bombyx_mori]
2040 O_BomoOtmSK11837_5prime_partial:A_BomoOtmSK_comp14084_c0_seq3
317bp
 zinc_finger_protein_528_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
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