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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1951 O_BomoOtmSK11757_complete:A_BomoOtmSK_comp14043_c0_seq1
784bp
 pre-rRNA-processing_protein_TSR1_homolog_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0022008 P neurogenesis
GO:0040018 P positive regulation of multicellular organism growth
GO:0042254 P ribosome biogenesis
GO:0042255 P ribosome assembly
GO:0090277 P positive regulation of peptide hormone secretion
1952 O_BomoOtmSK11758_internal:A_BomoOtmSK_comp14045_c0_seq1
333bp
 elongator_complex_protein_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006952 P defense response
GO:0007165 P signal transduction
GO:0008023 C transcription elongation factor complex
GO:0008607 F phosphorylase kinase regulator activity
GO:0009047 P dosage compensation by hyperactivation of X chromosome
GO:0016246 P RNA interference
GO:0045859 P regulation of protein kinase activity
1953 O_BomoOtmSK11759_5prime_partial:A_BomoOtmSK_comp14045_c1_seq1
966bp
 elongator_complex_protein_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0008023 C transcription elongation factor complex
GO:0008607 F phosphorylase kinase regulator activity
GO:0030335 P positive regulation of cell migration
GO:0033588 C elongator holoenzyme complex
GO:0045859 P regulation of protein kinase activity
1954 O_BomoOtmSK1175_complete:A_BomoOtmSK_comp4686_c0_seq1
100bp
1955 O_BomoOtmSK11760_3prime_partial:A_BomoOtmSK_comp14046_c0_seq1
498bp
 uncharacterized_protein_LOC101746086_[Bombyx_mori]
GO:0001702 P gastrulation with mouth forming second
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007398 P ectoderm development
GO:0036498 P IRE1-mediated unfolded protein response
GO:0045786 P negative regulation of cell cycle
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:1903146 P regulation of autophagy of mitochondrion
GO:1903955 P positive regulation of protein targeting to mitochondrion
1956 O_BomoOtmSK11761_3prime_partial:A_BomoOtmSK_comp14049_c0_seq1
922bp
 DNA_polymerase_V_[Bombyx_mori]
GO:0001047 F core promoter sequence-specific DNA binding
GO:0001649 P osteoblast differentiation
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006913 P nucleocytoplasmic transport
GO:0008134 F transcription factor binding
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0022904 P respiratory electron transport chain
GO:0032922 P circadian regulation of gene expression
GO:0042149 P cellular response to glucose starvation
GO:0042564 C NLS-dependent protein nuclear import complex
GO:0043231 C intracellular membrane-bounded organelle
GO:0043565 F sequence-specific DNA binding
GO:0044822 F RNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048511 P rhythmic process
GO:0071158 P regulation of cell cycle
GO:0071897 P DNA biosynthetic process
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
GO:2000210 P positive regulation of anoikis
1957 O_BomoOtmSK11762_5prime_partial:A_BomoOtmSK_comp14049_c0_seq1
174bp
1958 O_BomoOtmSK11763_complete:A_BomoOtmSK_comp14049_c0_seq1
159bp
 DNA_polymerase_V_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000182 F rDNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0009303 P rRNA transcription
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0042790 P nucleolar large rRNA transcription by RNA polymerase I
GO:0071897 P DNA biosynthetic process
1959 O_BomoOtmSK11764_complete:A_BomoOtmSK_comp14049_c0_seq1
123bp
1960 O_BomoOtmSK11765_3prime_partial:A_BomoOtmSK_comp14050_c0_seq1
157bp
 BRCA1-associated_protein_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007265 P Ras protein signal transduction
GO:0008139 F nuclear localization sequence binding
GO:0008270 F zinc ion binding
GO:0009968 P negative regulation of signal transduction
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031965 C nuclear membrane
GO:0042802 F identical protein binding
GO:0043130 F ubiquitin binding
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
1961 O_BomoOtmSK11766_3prime_partial:A_BomoOtmSK_comp14050_c0_seq3
264bp
 BRCA1-associated_protein_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007265 P Ras protein signal transduction
GO:0008139 F nuclear localization sequence binding
GO:0008270 F zinc ion binding
GO:0009968 P negative regulation of signal transduction
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031965 C nuclear membrane
GO:0042802 F identical protein binding
GO:0043130 F ubiquitin binding
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
1962 O_BomoOtmSK11767_complete:A_BomoOtmSK_comp14050_c0_seq3
100bp
1963 O_BomoOtmSK11768_internal:A_BomoOtmSK_comp14051_c0_seq1
829bp
 transcriptional_protein_SWT1_isoform_X2_[Bombyx_mori]
1964 O_BomoOtmSK11769_complete:A_BomoOtmSK_comp14051_c0_seq1
134bp
1965 O_BomoOtmSK1176_3prime_partial:A_BomoOtmSK_comp4688_c0_seq1
439bp
 protein_lin-54_homolog_isoform_X3_[Bombyx_mori]
1966 O_BomoOtmSK11770_complete:A_BomoOtmSK_comp14051_c0_seq1
120bp
1967 O_BomoOtmSK11771_3prime_partial:A_BomoOtmSK_comp14052_c0_seq1
277bp
 GPN-loop_GTPase_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005525 F GTP binding
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
1968 O_BomoOtmSK11772_5prime_partial:A_BomoOtmSK_comp14053_c0_seq1
146bp
 probable_helicase_senataxin_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0008152 P metabolic process
GO:0009553 P embryo sac development
GO:0009875 P pollen-pistil interaction
GO:0010183 P pollen tube guidance
GO:0016787 F hydrolase activity
1969 O_BomoOtmSK11773_complete:A_BomoOtmSK_comp14054_c1_seq1
139bp
 U2_small_nuclear_ribonucleoprotein_A'_[Helicoverpa_armigera]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
1970 O_BomoOtmSK11774_complete:A_BomoOtmSK_comp14054_c1_seq2
259bp
 U2_small_nuclear_ribonucleoprotein_A'_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
1971 O_BomoOtmSK11775_complete:A_BomoOtmSK_comp14055_c0_seq1
329bp
 uncharacterized_protein_LOC101738918_[Bombyx_mori]
1972 O_BomoOtmSK11776_5prime_partial:A_BomoOtmSK_comp14056_c0_seq1
895bp
 nuclear_valosin-containing_protein-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005697 C telomerase holoenzyme complex
GO:0005730 C nucleolus
GO:0005739 C mitochondrion
GO:0016020 C membrane
GO:0042254 P ribosome biogenesis
GO:0044822 F RNA binding
GO:0051973 P positive regulation of telomerase activity
GO:1990275 F preribosome binding
1973 O_BomoOtmSK11777_complete:A_BomoOtmSK_comp14056_c0_seq1
156bp
1974 O_BomoOtmSK11778_complete:A_BomoOtmSK_comp14056_c0_seq1
113bp
 hypothetical_protein_WY02_14540_[Pseudonocardia_sp._AL041005-10]
1975 O_BomoOtmSK11779_complete:A_BomoOtmSK_comp14056_c0_seq1
106bp
1976 O_BomoOtmSK1177_complete:A_BomoOtmSK_comp4691_c0_seq1
325bp
 proton-coupled_amino_acid_transporter_2_[Bombyx_mori]
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
1977 O_BomoOtmSK11780_5prime_partial:A_BomoOtmSK_comp14057_c0_seq1
168bp
 required_for_meiotic_nuclear_division_protein_1_homolog_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0070131 P positive regulation of mitochondrial translation
1978 O_BomoOtmSK11781_5prime_partial:A_BomoOtmSK_comp14057_c0_seq2
146bp
 required_for_meiotic_nuclear_division_protein_1_homolog_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0070131 P positive regulation of mitochondrial translation
1979 O_BomoOtmSK11782_complete:A_BomoOtmSK_comp14058_c0_seq1
816bp
 uncharacterized_protein_LOC101739942_[Bombyx_mori]
1980 O_BomoOtmSK11783_complete:A_BomoOtmSK_comp14058_c0_seq1
142bp
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