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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1891 O_BomoOtmSK11702_5prime_partial:A_BomoOtmSK_comp14014_c0_seq1
122bp
1892 O_BomoOtmSK11703_3prime_partial:A_BomoOtmSK_comp14015_c0_seq1
350bp
 AT-rich_interactive_domain-containing_protein_5B_isoform_X4_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001227 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001822 P kidney development
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006807 P nitrogen compound metabolic process
GO:0008584 P male gonad development
GO:0008585 P female gonad development
GO:0009791 P post-embryonic development
GO:0010761 P fibroblast migration
GO:0030325 P adrenal gland development
GO:0035264 P multicellular organism growth
GO:0044212 F transcription cis-regulatory region binding
GO:0045444 P fat cell differentiation
GO:0048008 P platelet-derived growth factor receptor signaling pathway
GO:0048468 P cell development
GO:0048644 P muscle organ morphogenesis
GO:0048705 P skeletal system morphogenesis
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0060021 P roof of mouth development
GO:0060325 P face morphogenesis
GO:0060612 P adipose tissue development
GO:0060613 P fat pad development
1893 O_BomoOtmSK11704_5prime_partial:A_BomoOtmSK_comp14016_c0_seq2
126bp
1894 O_BomoOtmSK11705_complete:A_BomoOtmSK_comp14016_c0_seq2
121bp
 histone-lysine_N-methyltransferase_SETMAR-like,_partial_[Pseudomyrmex_gracilis]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
1895 O_BomoOtmSK11706_complete:A_BomoOtmSK_comp14016_c0_seq4
111bp
 transposase,_partial_[Cadra_cautella]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
1896 O_BomoOtmSK11707_3prime_partial:A_BomoOtmSK_comp14018_c0_seq1
314bp
 protein_EFR3_homolog_cmp44E_[Bombyx_mori]
GO:0000281 P mitotic cytokinesis
GO:0003674 F molecular_function
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007268 P chemical synaptic transmission
GO:0007602 P phototransduction
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016079 P synaptic vesicle exocytosis
GO:0030100 P regulation of endocytosis
GO:0045202 C synapse
GO:0048488 P synaptic vesicle endocytosis
GO:0098793 C presynapse
1897 O_BomoOtmSK11708_5prime_partial:A_BomoOtmSK_comp14018_c0_seq1
208bp
1898 O_BomoOtmSK11709_5prime_partial:A_BomoOtmSK_comp14018_c0_seq1
175bp
1899 O_BomoOtmSK1170_complete:A_BomoOtmSK_comp4683_c0_seq1
114bp
1900 O_BomoOtmSK11710_3prime_partial:A_BomoOtmSK_comp14018_c0_seq1
126bp
1901 O_BomoOtmSK11711_internal:A_BomoOtmSK_comp14018_c0_seq2
200bp
1902 O_BomoOtmSK11712_internal:A_BomoOtmSK_comp14018_c0_seq2
200bp
1903 O_BomoOtmSK11713_5prime_partial:A_BomoOtmSK_comp14018_c0_seq2
175bp
1904 O_BomoOtmSK11714_3prime_partial:A_BomoOtmSK_comp14018_c0_seq2
165bp
 protein_EFR3_homolog_cmp44E_[Bombyx_mori]
GO:0000281 P mitotic cytokinesis
GO:0003674 F molecular_function
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007268 P chemical synaptic transmission
GO:0007602 P phototransduction
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016079 P synaptic vesicle exocytosis
GO:0030100 P regulation of endocytosis
GO:0045202 C synapse
GO:0048488 P synaptic vesicle endocytosis
GO:0098793 C presynapse
1905 O_BomoOtmSK11715_internal:A_BomoOtmSK_comp14020_c0_seq1
792bp
 LOW_QUALITY_PROTEIN:_E3_ubiquitin-protein_ligase_UBR1_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0005737 C cytoplasm
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0008023 C transcription elongation factor complex
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030163 P protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:0071596 P ubiquitin-dependent protein catabolic process via the N-end rule pathway
1906 O_BomoOtmSK11716_complete:A_BomoOtmSK_comp14020_c0_seq1
108bp
1907 O_BomoOtmSK11717_complete:A_BomoOtmSK_comp14020_c0_seq1
108bp
1908 O_BomoOtmSK11718_3prime_partial:A_BomoOtmSK_comp14024_c0_seq1
788bp
 LOW_QUALITY_PROTEIN:_PHD_and_RING_finger_domain-containing_protein_1_[Bombyx_mori]
GO:0006366 P transcription by RNA polymerase II
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0019904 F protein domain specific binding
GO:0046872 F metal ion binding
GO:0070063 F RNA polymerase binding
1909 O_BomoOtmSK11719_complete:A_BomoOtmSK_comp14024_c0_seq1
149bp
1910 O_BomoOtmSK1171_3prime_partial:A_BomoOtmSK_comp4683_c0_seq1
112bp
1911 O_BomoOtmSK11720_complete:A_BomoOtmSK_comp14024_c0_seq1
134bp
1912 O_BomoOtmSK11721_5prime_partial:A_BomoOtmSK_comp14024_c0_seq1
123bp
1913 O_BomoOtmSK11722_complete:A_BomoOtmSK_comp14024_c0_seq1
109bp
1914 O_BomoOtmSK11723_complete:A_BomoOtmSK_comp14025_c0_seq1
915bp
 PREDICTED:_UPF0518_protein_GJ17503_isoform_X2_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
1915 O_BomoOtmSK11724_complete:A_BomoOtmSK_comp14025_c0_seq2
922bp
 PREDICTED:_UPF0518_protein_GF15501_isoform_X1_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
1916 O_BomoOtmSK11725_complete:A_BomoOtmSK_comp14026_c0_seq1
437bp
 glucose_transporter,_partial_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005355 F glucose transmembrane transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006461 P protein-containing complex assembly
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015758 P glucose transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0030864 C cortical actin cytoskeleton
GO:0042470 C melanosome
GO:0043621 F protein self-association
GO:0055085 P transmembrane transport
GO:1904659 P glucose transmembrane transport
1917 O_BomoOtmSK11726_complete:A_BomoOtmSK_comp14026_c0_seq1
117bp
1918 O_BomoOtmSK11727_complete:A_BomoOtmSK_comp14026_c0_seq1
104bp
 solute_carrier_family_2,_facilitated_glucose_transporter_member_1_isoform_X2_[Bombyx_mori]
1919 O_BomoOtmSK11728_complete:A_BomoOtmSK_comp14027_c0_seq1
384bp
 WD_repeat-containing_protein_89_[Bombyx_mori]
1920 O_BomoOtmSK11729_complete:A_BomoOtmSK_comp14027_c0_seq1
123bp
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