SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/35878
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1861 O_BomoOtmSK11676_5prime_partial:A_BomoOtmSK_comp14002_c0_seq2
152bp
 uncharacterized_protein_LOC101741752_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
1862 O_BomoOtmSK11677_3prime_partial:A_BomoOtmSK_comp14002_c0_seq2
129bp
1863 O_BomoOtmSK11678_5prime_partial:A_BomoOtmSK_comp14003_c0_seq1
184bp
 CHH-like_protein_isoform_X1_[Bombyx_mori]
GO:0005179 F hormone activity
GO:0005184 F neuropeptide hormone activity
GO:0005576 C extracellular region
GO:0007218 P neuropeptide signaling pathway
1864 O_BomoOtmSK11679_complete:A_BomoOtmSK_comp14007_c0_seq1
334bp
 geranylgeranyl_transferase_type-2_subunit_beta_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004659 F prenyltransferase activity
GO:0004663 F Rab geranylgeranyltransferase activity
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005968 C Rab-protein geranylgeranyltransferase complex
GO:0006464 P cellular protein modification process
GO:0007601 P visual perception
GO:0008270 F zinc ion binding
GO:0016740 F transferase activity
GO:0017137 F small GTPase binding
GO:0018344 P protein geranylgeranylation
GO:0042981 P regulation of apoptotic process
GO:0046872 F metal ion binding
1865 O_BomoOtmSK1167_3prime_partial:A_BomoOtmSK_comp4682_c0_seq1
420bp
 probable_ATP-dependent_RNA_helicase_YTHDC2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006396 P RNA processing
GO:0008186 F ATP-dependent activity, acting on RNA
GO:0016787 F hydrolase activity
GO:0034612 P response to tumor necrosis factor
GO:0044822 F RNA binding
GO:0044829 P positive regulation by host of viral genome replication
GO:0070063 F RNA polymerase binding
GO:0070555 P response to interleukin-1
GO:1990247 F N6-methyladenosine-containing RNA binding
1866 O_BomoOtmSK11680_3prime_partial:A_BomoOtmSK_comp14008_c0_seq2
188bp
 ras-related_protein_Rab-28-like_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019003 F GDP binding
GO:0035253 C ciliary rootlet
GO:0036064 C ciliary basal body
GO:0042995 C cell projection
GO:1901998 P toxin transport
1867 O_BomoOtmSK11681_complete:A_BomoOtmSK_comp14009_c0_seq1
305bp
 protein_spinster_isoform_X1_[Bombyx_mori]
GO:0003376 P sphingosine-1-phosphate receptor signaling pathway
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0006897 P endocytosis
GO:0007040 P lysosome organization
GO:0007275 P multicellular organism development
GO:0007422 P peripheral nervous system development
GO:0007619 P courtship behavior
GO:0008333 P endosome to lysosome transport
GO:0008347 P glial cell migration
GO:0008582 P regulation of synaptic assembly at neuromuscular junction
GO:0009267 P cellular response to starvation
GO:0010001 P glial cell differentiation
GO:0012501 P programmed cell death
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
GO:0031902 C late endosome membrane
GO:0031982 C vesicle
GO:0035193 P larval central nervous system remodeling
GO:0040011 P locomotion
GO:0043067 P regulation of programmed cell death
GO:0045476 P nurse cell apoptotic process
GO:0045477 P regulation of nurse cell apoptotic process
GO:0045924 P regulation of female receptivity
GO:0046624 F sphingolipid transporter activity
GO:0048477 P oogenesis
GO:0048488 P synaptic vesicle endocytosis
GO:0051124 P synaptic assembly at neuromuscular junction
GO:0055085 P transmembrane transport
GO:0090099 P negative regulation of BMP signaling pathway
1868 O_BomoOtmSK11682_complete:A_BomoOtmSK_comp14009_c0_seq2
305bp
 protein_spinster_isoform_X1_[Bombyx_mori]
GO:0003376 P sphingosine-1-phosphate receptor signaling pathway
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0006897 P endocytosis
GO:0007040 P lysosome organization
GO:0007275 P multicellular organism development
GO:0007422 P peripheral nervous system development
GO:0007619 P courtship behavior
GO:0008333 P endosome to lysosome transport
GO:0008347 P glial cell migration
GO:0008582 P regulation of synaptic assembly at neuromuscular junction
GO:0009267 P cellular response to starvation
GO:0010001 P glial cell differentiation
GO:0012501 P programmed cell death
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
GO:0031902 C late endosome membrane
GO:0031982 C vesicle
GO:0035193 P larval central nervous system remodeling
GO:0040011 P locomotion
GO:0043067 P regulation of programmed cell death
GO:0045476 P nurse cell apoptotic process
GO:0045477 P regulation of nurse cell apoptotic process
GO:0045924 P regulation of female receptivity
GO:0046624 F sphingolipid transporter activity
GO:0048477 P oogenesis
GO:0048488 P synaptic vesicle endocytosis
GO:0051124 P synaptic assembly at neuromuscular junction
GO:0055085 P transmembrane transport
GO:0090099 P negative regulation of BMP signaling pathway
1869 O_BomoOtmSK11683_3prime_partial:A_BomoOtmSK_comp14009_c0_seq3
315bp
 protein_spinster_isoform_X2_[Bombyx_mori]
GO:0003376 P sphingosine-1-phosphate receptor signaling pathway
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0006897 P endocytosis
GO:0007040 P lysosome organization
GO:0007275 P multicellular organism development
GO:0007422 P peripheral nervous system development
GO:0007619 P courtship behavior
GO:0008333 P endosome to lysosome transport
GO:0008347 P glial cell migration
GO:0008582 P regulation of synaptic assembly at neuromuscular junction
GO:0009267 P cellular response to starvation
GO:0010001 P glial cell differentiation
GO:0012501 P programmed cell death
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
GO:0031902 C late endosome membrane
GO:0031982 C vesicle
GO:0035193 P larval central nervous system remodeling
GO:0040011 P locomotion
GO:0043067 P regulation of programmed cell death
GO:0045476 P nurse cell apoptotic process
GO:0045477 P regulation of nurse cell apoptotic process
GO:0045924 P regulation of female receptivity
GO:0046624 F sphingolipid transporter activity
GO:0048477 P oogenesis
GO:0048488 P synaptic vesicle endocytosis
GO:0051124 P synaptic assembly at neuromuscular junction
GO:0055085 P transmembrane transport
GO:0090099 P negative regulation of BMP signaling pathway
1870 O_BomoOtmSK11684_5prime_partial:A_BomoOtmSK_comp14009_c0_seq3
110bp
1871 O_BomoOtmSK11685_3prime_partial:A_BomoOtmSK_comp14010_c0_seq1
1044bp
 retroelement_polyprotein_[Glyptapanteles_flavicoxis]
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
1872 O_BomoOtmSK11686_5prime_partial:A_BomoOtmSK_comp14010_c0_seq1
150bp
1873 O_BomoOtmSK11687_complete:A_BomoOtmSK_comp14010_c0_seq1
103bp
1874 O_BomoOtmSK11688_5prime_partial:A_BomoOtmSK_comp14010_c0_seq1
102bp
1875 O_BomoOtmSK11689_internal:A_BomoOtmSK_comp14010_c0_seq2
1157bp
 retroelement_polyprotein_[Glyptapanteles_flavicoxis]
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
1876 O_BomoOtmSK1168_5prime_partial:A_BomoOtmSK_comp4682_c0_seq1
154bp
1877 O_BomoOtmSK11690_5prime_partial:A_BomoOtmSK_comp14010_c0_seq2
150bp
1878 O_BomoOtmSK11691_complete:A_BomoOtmSK_comp14010_c0_seq2
103bp
1879 O_BomoOtmSK11692_5prime_partial:A_BomoOtmSK_comp14010_c0_seq2
102bp
1880 O_BomoOtmSK11693_5prime_partial:A_BomoOtmSK_comp14011_c0_seq1
102bp
1881 O_BomoOtmSK11694_3prime_partial:A_BomoOtmSK_comp14011_c0_seq1
101bp
 actin_cytoskeleton-regulatory_complex_protein_pan-1-like_[Bombyx_mori]
1882 O_BomoOtmSK11695_5prime_partial:A_BomoOtmSK_comp14011_c0_seq1
101bp
1883 O_BomoOtmSK11696_internal:A_BomoOtmSK_comp14011_c0_seq2
177bp
1884 O_BomoOtmSK11697_internal:A_BomoOtmSK_comp14013_c0_seq1
401bp
 PREDICTED:_ski_oncogene_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0006351 P transcription, DNA-templated
GO:0046332 F SMAD binding
1885 O_BomoOtmSK11698_complete:A_BomoOtmSK_comp14013_c0_seq1
107bp
1886 O_BomoOtmSK11699_internal:A_BomoOtmSK_comp14013_c0_seq2
351bp
 PREDICTED:_ski_oncogene_[Amyelois_transitella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0019904 F protein domain specific binding
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0042803 F protein homodimerization activity
GO:0042981 P regulation of apoptotic process
GO:0043565 F sequence-specific DNA binding
GO:0046332 F SMAD binding
GO:0046982 F protein heterodimerization activity
GO:0070491 F DNA-binding transcription factor binding
1887 O_BomoOtmSK1169_5prime_partial:A_BomoOtmSK_comp4683_c0_seq1
739bp
 angiopoietin-related_protein_2_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0016337 P cell-cell adhesion
GO:0030246 F carbohydrate binding
GO:0046872 F metal ion binding
1888 O_BomoOtmSK116_internal:A_BomoOtmSK_comp443_c0_seq1
207bp
 homeobox_protein_MOX-2_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001205 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001525 P angiogenesis
GO:0001757 P somite specification
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007519 P skeletal muscle tissue development
GO:0008015 P blood circulation
GO:0016607 C nuclear speck
GO:0043565 F sequence-specific DNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0060021 P roof of mouth development
GO:0060173 P limb development
GO:0070997 P neuron death
1889 O_BomoOtmSK11700_complete:A_BomoOtmSK_comp14013_c0_seq2
107bp
1890 O_BomoOtmSK11701_internal:A_BomoOtmSK_comp14014_c0_seq1
228bp
 WD_repeat-containing_protein_3-like_[Bombyx_mori]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030515 F snoRNA binding
GO:0031965 C nuclear membrane
GO:0032040 C small-subunit processome
GO:0034388 C Pwp2p-containing subcomplex of 90S preribosome
GO:0044822 F RNA binding
previous next from show/35878

- SilkBase 1999-2023 -