SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/35878
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1831 O_BomoOtmSK11649_complete:A_BomoOtmSK_comp13988_c0_seq2
496bp
 3-phosphoinositide-dependent_protein_kinase_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001558 P regulation of cell growth
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007166 P cell surface receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007292 P female gamete generation
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007548 P sex differentiation
GO:0008286 P insulin receptor signaling pathway
GO:0010906 P regulation of glucose metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0030154 P cell differentiation
GO:0030307 P positive regulation of cell growth
GO:0031594 C neuromuscular junction
GO:0035556 P intracellular signal transduction
GO:0040008 P regulation of growth
GO:0040018 P positive regulation of multicellular organism growth
GO:0043066 P negative regulation of apoptotic process
GO:0045471 P response to ethanol
GO:0045793 P positive regulation of cell size
GO:0046620 P regulation of organ growth
GO:0051124 P synaptic assembly at neuromuscular junction
1832 O_BomoOtmSK1164_complete:A_BomoOtmSK_comp4677_c0_seq2
345bp
 protein_NDRG3_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0007165 P signal transduction
GO:0007283 P spermatogenesis
GO:0030154 P cell differentiation
GO:0030308 P negative regulation of cell growth
GO:0070062 C extracellular exosome
1833 O_BomoOtmSK11650_complete:A_BomoOtmSK_comp13990_c0_seq1
279bp
 fidgetin-like_protein_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000287 F magnesium ion binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0016787 F hydrolase activity
GO:0046034 P ATP metabolic process
GO:0046872 F metal ion binding
1834 O_BomoOtmSK11651_complete:A_BomoOtmSK_comp13990_c0_seq1
247bp
 AAEL000367-PA_[Aedes_aegypti]
1835 O_BomoOtmSK11652_5prime_partial:A_BomoOtmSK_comp13990_c0_seq3
502bp
 fidgetin-like_protein_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000287 F magnesium ion binding
GO:0001649 P osteoblast differentiation
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008568 F microtubule-severing ATPase activity
GO:0010569 P regulation of double-strand break repair via homologous recombination
GO:0016787 F hydrolase activity
GO:0031122 P cytoplasmic microtubule organization
GO:0033687 P osteoblast proliferation
GO:0043066 P negative regulation of apoptotic process
GO:0046034 P ATP metabolic process
GO:0046872 F metal ion binding
GO:0051726 P regulation of cell cycle
GO:0070062 C extracellular exosome
GO:0071479 P cellular response to ionizing radiation
GO:2001243 P negative regulation of intrinsic apoptotic signaling pathway
1836 O_BomoOtmSK11653_complete:A_BomoOtmSK_comp13990_c0_seq3
247bp
 AAEL000367-PA_[Aedes_aegypti]
1837 O_BomoOtmSK11654_5prime_partial:A_BomoOtmSK_comp13990_c0_seq4
270bp
 fidgetin-like_protein_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000287 F magnesium ion binding
GO:0001649 P osteoblast differentiation
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008568 F microtubule-severing ATPase activity
GO:0010569 P regulation of double-strand break repair via homologous recombination
GO:0016787 F hydrolase activity
GO:0031122 P cytoplasmic microtubule organization
GO:0033687 P osteoblast proliferation
GO:0043066 P negative regulation of apoptotic process
GO:0046034 P ATP metabolic process
GO:0046872 F metal ion binding
GO:0051726 P regulation of cell cycle
GO:0070062 C extracellular exosome
GO:0071479 P cellular response to ionizing radiation
GO:2001243 P negative regulation of intrinsic apoptotic signaling pathway
1838 O_BomoOtmSK11655_3prime_partial:A_BomoOtmSK_comp13990_c0_seq6
318bp
 fidgetin-like_protein_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000287 F magnesium ion binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0016787 F hydrolase activity
GO:0046034 P ATP metabolic process
GO:0046872 F metal ion binding
1839 O_BomoOtmSK11656_complete:A_BomoOtmSK_comp13990_c0_seq6
317bp
 AAEL000367-PA_[Aedes_aegypti]
1840 O_BomoOtmSK11657_internal:A_BomoOtmSK_comp13990_c0_seq7
541bp
 fidgetin-like_protein_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000287 F magnesium ion binding
GO:0001649 P osteoblast differentiation
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008568 F microtubule-severing ATPase activity
GO:0010569 P regulation of double-strand break repair via homologous recombination
GO:0016787 F hydrolase activity
GO:0031122 P cytoplasmic microtubule organization
GO:0033687 P osteoblast proliferation
GO:0043066 P negative regulation of apoptotic process
GO:0046034 P ATP metabolic process
GO:0046872 F metal ion binding
GO:0051726 P regulation of cell cycle
GO:0070062 C extracellular exosome
GO:0071479 P cellular response to ionizing radiation
GO:2001243 P negative regulation of intrinsic apoptotic signaling pathway
1841 O_BomoOtmSK11658_complete:A_BomoOtmSK_comp13990_c0_seq7
317bp
 AAEL000367-PA_[Aedes_aegypti]
1842 O_BomoOtmSK11659_complete:A_BomoOtmSK_comp13991_c0_seq1
243bp
 PREDICTED:_craniofacial_development_protein_2-like_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
1843 O_BomoOtmSK1165_complete:A_BomoOtmSK_comp4677_c0_seq2
131bp
 hypothetical_protein_ALC53_07882,_partial_[Atta_colombica]
1844 O_BomoOtmSK11660_complete:A_BomoOtmSK_comp13991_c0_seq2
243bp
 PREDICTED:_craniofacial_development_protein_2-like_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
1845 O_BomoOtmSK11661_internal:A_BomoOtmSK_comp13993_c0_seq1
130bp
 polyprotein,_partial_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
1846 O_BomoOtmSK11662_3prime_partial:A_BomoOtmSK_comp13995_c0_seq1
333bp
 ATP-binding_cassette_sub-family_F_member_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016887 F ATP hydrolysis activity
GO:0051607 P defense response to virus
1847 O_BomoOtmSK11663_5prime_partial:A_BomoOtmSK_comp13995_c0_seq1
236bp
1848 O_BomoOtmSK11664_5prime_partial:A_BomoOtmSK_comp13995_c1_seq1
381bp
 ATP-binding_cassette_sub-family_F_member_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016887 F ATP hydrolysis activity
GO:0051607 P defense response to virus
1849 O_BomoOtmSK11665_complete:A_BomoOtmSK_comp13996_c0_seq1
129bp
 guanine_nucleotide_exchange_factor_MSS4_homolog_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005575 C cellular_component
GO:0005829 C cytosol
GO:0006810 P transport
GO:0007264 P small GTPase mediated signal transduction
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
1850 O_BomoOtmSK11666_complete:A_BomoOtmSK_comp13997_c0_seq1
802bp
 vacuolar_protein_sorting-associated_protein_53_homolog_[Bombyx_mori]
GO:0000938 C GARP complex
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0032456 P endocytic recycling
GO:0042147 P retrograde transport, endosome to Golgi
GO:0055037 C recycling endosome
GO:1990745 C EARP complex
1851 O_BomoOtmSK11667_complete:A_BomoOtmSK_comp13997_c0_seq1
155bp
1852 O_BomoOtmSK11668_complete:A_BomoOtmSK_comp13997_c0_seq2
377bp
 vacuolar_protein_sorting-associated_protein_53_homolog_[Bombyx_mori]
GO:0000938 C GARP complex
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0032456 P endocytic recycling
GO:0042147 P retrograde transport, endosome to Golgi
GO:0055037 C recycling endosome
GO:1990745 C EARP complex
1853 O_BomoOtmSK11669_complete:A_BomoOtmSK_comp13998_c0_seq1
216bp
 protein_NDUFAF4_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0032981 P mitochondrial respiratory chain complex I assembly
1854 O_BomoOtmSK1166_internal:A_BomoOtmSK_comp4681_c0_seq1
156bp
 uncharacterized_protein_LOC110385005,_partial_[Bombyx_mori]
1855 O_BomoOtmSK11670_3prime_partial:A_BomoOtmSK_comp14000_c0_seq2
526bp
 F-box/LRR-repeat_protein_7_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0009953 P dorsal/ventral pattern formation
GO:0016567 P protein ubiquitination
GO:0019005 C SCF ubiquitin ligase complex
GO:0030282 P bone mineralization
GO:0030513 P positive regulation of BMP signaling pathway
GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
1856 O_BomoOtmSK11671_complete:A_BomoOtmSK_comp14000_c0_seq2
135bp
1857 O_BomoOtmSK11672_3prime_partial:A_BomoOtmSK_comp14000_c0_seq4
522bp
 F-box/LRR-repeat_protein_7_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0009953 P dorsal/ventral pattern formation
GO:0016567 P protein ubiquitination
GO:0019005 C SCF ubiquitin ligase complex
GO:0030282 P bone mineralization
GO:0030513 P positive regulation of BMP signaling pathway
GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
1858 O_BomoOtmSK11673_complete:A_BomoOtmSK_comp14000_c0_seq4
135bp
1859 O_BomoOtmSK11674_complete:A_BomoOtmSK_comp14001_c0_seq1
210bp
 ras-related_and_estrogen-regulated_growth_inhibitor_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0008285 P negative regulation of cell population proliferation
GO:0009725 P response to hormone
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030308 P negative regulation of cell growth
1860 O_BomoOtmSK11675_3prime_partial:A_BomoOtmSK_comp14002_c0_seq1
99bp
previous next from show/35878

- SilkBase 1999-2023 -