SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/35878
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1801 O_BomoOtmSK11621_complete:A_BomoOtmSK_comp13978_c0_seq1
616bp
 host_cell_factor_isoform_X1_[Bombyx_mori]
GO:0003682 F chromatin binding
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0006338 P chromatin remodeling
GO:0007049 P cell cycle
GO:0016573 P histone acetylation
GO:0043966 P histone H3 acetylation
GO:0043967 P histone H4 acetylation
GO:0044665 C MLL1/2 complex
GO:0044666 C MLL3/4 complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045927 P positive regulation of growth
GO:0048188 C Set1C/COMPASS complex
GO:0051568 P histone H3-K4 methylation
1802 O_BomoOtmSK11622_complete:A_BomoOtmSK_comp13978_c0_seq1
112bp
1803 O_BomoOtmSK11623_complete:A_BomoOtmSK_comp13978_c0_seq2
608bp
 host_cell_factor_isoform_X2_[Bombyx_mori]
GO:0003682 F chromatin binding
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0006338 P chromatin remodeling
GO:0007049 P cell cycle
GO:0016573 P histone acetylation
GO:0043966 P histone H3 acetylation
GO:0043967 P histone H4 acetylation
GO:0044665 C MLL1/2 complex
GO:0044666 C MLL3/4 complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045927 P positive regulation of growth
GO:0048188 C Set1C/COMPASS complex
GO:0051568 P histone H3-K4 methylation
1804 O_BomoOtmSK11624_complete:A_BomoOtmSK_comp13978_c0_seq2
104bp
1805 O_BomoOtmSK11625_complete:A_BomoOtmSK_comp13978_c0_seq3
616bp
 host_cell_factor_isoform_X1_[Bombyx_mori]
GO:0003682 F chromatin binding
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0006338 P chromatin remodeling
GO:0007049 P cell cycle
GO:0016573 P histone acetylation
GO:0043966 P histone H3 acetylation
GO:0043967 P histone H4 acetylation
GO:0044665 C MLL1/2 complex
GO:0044666 C MLL3/4 complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045927 P positive regulation of growth
GO:0048188 C Set1C/COMPASS complex
GO:0051568 P histone H3-K4 methylation
1806 O_BomoOtmSK11626_complete:A_BomoOtmSK_comp13978_c0_seq3
112bp
1807 O_BomoOtmSK11627_complete:A_BomoOtmSK_comp13978_c0_seq4
608bp
 host_cell_factor_isoform_X2_[Bombyx_mori]
GO:0003682 F chromatin binding
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0006338 P chromatin remodeling
GO:0007049 P cell cycle
GO:0016573 P histone acetylation
GO:0043966 P histone H3 acetylation
GO:0043967 P histone H4 acetylation
GO:0044665 C MLL1/2 complex
GO:0044666 C MLL3/4 complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045927 P positive regulation of growth
GO:0048188 C Set1C/COMPASS complex
GO:0051568 P histone H3-K4 methylation
1808 O_BomoOtmSK11628_complete:A_BomoOtmSK_comp13978_c0_seq4
104bp
1809 O_BomoOtmSK11629_complete:A_BomoOtmSK_comp13979_c0_seq1
413bp
 headcase_protein_[Bombyx_mori]
GO:0002165 P instar larval or pupal development
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0007424 P open tracheal system development
GO:0007430 P terminal branching, open tracheal system
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0016246 P RNA interference
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0030424 C axon
GO:0030425 C dendrite
GO:0035071 P salivary gland cell autophagic cell death
GO:0035147 P branch fusion, open tracheal system
GO:0035155 P negative regulation of terminal cell fate specification, open tracheal system
GO:0048471 C perinuclear region of cytoplasm
GO:0048675 P axon extension
GO:0050768 P negative regulation of neurogenesis
GO:1904799 P regulation of neuron remodeling
1810 O_BomoOtmSK1162_complete:A_BomoOtmSK_comp4677_c0_seq1
131bp
 hypothetical_protein_ALC53_07882,_partial_[Atta_colombica]
1811 O_BomoOtmSK11630_complete:A_BomoOtmSK_comp13979_c0_seq1
129bp
1812 O_BomoOtmSK11631_complete:A_BomoOtmSK_comp13979_c0_seq1
113bp
1813 O_BomoOtmSK11632_internal:A_BomoOtmSK_comp13981_c0_seq1
201bp
 B-box_type_zinc_finger_protein_ncl-1-like_[Labrus_bergylta]
1814 O_BomoOtmSK11633_3prime_partial:A_BomoOtmSK_comp13981_c0_seq1
114bp
 hypothetical_protein_PIROE2DRAFT_17870,_partial_[Piromyces_sp._E2]
1815 O_BomoOtmSK11634_internal:A_BomoOtmSK_comp13981_c0_seq2
201bp
 PREDICTED:_adhesive_plaque_matrix_protein-like_[Salmo_salar]
1816 O_BomoOtmSK11635_3prime_partial:A_BomoOtmSK_comp13981_c0_seq2
114bp
 hypothetical_protein_PIROE2DRAFT_17870,_partial_[Piromyces_sp._E2]
1817 O_BomoOtmSK11636_complete:A_BomoOtmSK_comp13982_c0_seq1
664bp
 protein_SPT2_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
1818 O_BomoOtmSK11637_complete:A_BomoOtmSK_comp13982_c0_seq1
103bp
1819 O_BomoOtmSK11638_complete:A_BomoOtmSK_comp13985_c0_seq1
290bp
 cysteine_and_histidine-rich_protein_1-B_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0004842 F ubiquitin-protein transferase activity
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0046872 F metal ion binding
1820 O_BomoOtmSK11639_complete:A_BomoOtmSK_comp13985_c0_seq2
352bp
 cysteine_and_histidine-rich_protein_1_homolog_isoform_X2_[Helicoverpa_armigera]
GO:0003674 F molecular_function
GO:0004842 F ubiquitin-protein transferase activity
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0046872 F metal ion binding
1821 O_BomoOtmSK1163_complete:A_BomoOtmSK_comp4677_c0_seq1
106bp
1822 O_BomoOtmSK11640_5prime_partial:A_BomoOtmSK_comp13987_c0_seq1
763bp
 DNA_helicase_MCM8_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007292 P female gamete generation
GO:0016787 F hydrolase activity
GO:0048232 P male gamete generation
GO:0097362 C MCM8-MCM9 complex
1823 O_BomoOtmSK11641_5prime_partial:A_BomoOtmSK_comp13987_c0_seq2
533bp
 DNA_helicase_MCM8_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007292 P female gamete generation
GO:0016787 F hydrolase activity
GO:0048232 P male gamete generation
GO:0097362 C MCM8-MCM9 complex
1824 O_BomoOtmSK11642_complete:A_BomoOtmSK_comp13987_c0_seq3
583bp
 DNA_helicase_MCM8_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007292 P female gamete generation
GO:0016787 F hydrolase activity
GO:0048232 P male gamete generation
GO:0097362 C MCM8-MCM9 complex
1825 O_BomoOtmSK11643_3prime_partial:A_BomoOtmSK_comp13987_c0_seq3
168bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
1826 O_BomoOtmSK11644_3prime_partial:A_BomoOtmSK_comp13987_c0_seq4
168bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
1827 O_BomoOtmSK11645_5prime_partial:A_BomoOtmSK_comp13987_c0_seq5
215bp
 DNA_helicase_MCM8_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007292 P female gamete generation
GO:0016787 F hydrolase activity
GO:0048232 P male gamete generation
GO:0097362 C MCM8-MCM9 complex
1828 O_BomoOtmSK11646_complete:A_BomoOtmSK_comp13987_c0_seq6
353bp
 DNA_helicase_MCM8_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007292 P female gamete generation
GO:0016787 F hydrolase activity
GO:0048232 P male gamete generation
GO:0097362 C MCM8-MCM9 complex
1829 O_BomoOtmSK11647_3prime_partial:A_BomoOtmSK_comp13987_c0_seq6
168bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
1830 O_BomoOtmSK11648_complete:A_BomoOtmSK_comp13988_c0_seq1
566bp
 3-phosphoinositide-dependent_protein_kinase_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001558 P regulation of cell growth
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007166 P cell surface receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007292 P female gamete generation
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007548 P sex differentiation
GO:0008286 P insulin receptor signaling pathway
GO:0010906 P regulation of glucose metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0030154 P cell differentiation
GO:0030307 P positive regulation of cell growth
GO:0031594 C neuromuscular junction
GO:0035556 P intracellular signal transduction
GO:0040008 P regulation of growth
GO:0040018 P positive regulation of multicellular organism growth
GO:0043066 P negative regulation of apoptotic process
GO:0045471 P response to ethanol
GO:0045793 P positive regulation of cell size
GO:0046620 P regulation of organ growth
GO:0051124 P synaptic assembly at neuromuscular junction
previous next from show/35878

- SilkBase 1999-2023 -