Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
1291	O_BomoOtmSK11162_complete:A_BomoOtmSK_comp13820_c1_seq1 147bp	Bomo_Chr21	uncharacterized_protein_LOC101743893_isoform_X2_[Bombyx_mori]
1292	O_BomoOtmSK11163_complete:A_BomoOtmSK_comp13821_c0_seq1 226bp	Bomo_Chr6	scavenger_receptor_class_B_type_1_like_protein_11_[Bombyx_mori]	GO:0001530 F lipopolysaccharide binding GO:0001875 F lipopolysaccharide immune receptor activity GO:0001935 P endothelial cell proliferation GO:0005737 C cytoplasm GO:0005765 C lysosomal membrane GO:0005886 C plasma membrane GO:0005887 C integral component of plasma membrane GO:0005901 C caveola GO:0006707 P cholesterol catabolic process GO:0006898 P receptor-mediated endocytosis GO:0008035 F high-density lipoprotein particle binding GO:0009986 C cell surface GO:0010867 P positive regulation of triglyceride biosynthetic process GO:0010886 P positive regulation of cholesterol storage GO:0010899 P regulation of phosphatidylcholine catabolic process GO:0015914 P phospholipid transport GO:0015920 P lipopolysaccharide transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0030169 F low-density lipoprotein particle binding GO:0030301 P cholesterol transport GO:0031663 P lipopolysaccharide-mediated signaling pathway GO:0032497 P detection of lipopolysaccharide GO:0033344 P cholesterol efflux GO:0034185 F apolipoprotein binding GO:0034186 F apolipoprotein A-I binding GO:0034375 P high-density lipoprotein particle remodeling GO:0034383 P low-density lipoprotein particle clearance GO:0034384 P high-density lipoprotein particle clearance GO:0035461 P vitamin transmembrane transport GO:0042632 P cholesterol homeostasis GO:0043231 C intracellular membrane-bounded organelle GO:0043534 P blood vessel endothelial cell migration GO:0043654 P recognition of apoptotic cell GO:0043691 P reverse cholesterol transport GO:0044406 P adhesion of symbiont to host GO:0050892 P intestinal absorption GO:0051000 P positive regulation of nitric-oxide synthase activity GO:0070062 C extracellular exosome GO:0070328 P triglyceride homeostasis GO:0070506 F high-density lipoprotein particle receptor activity GO:0070508 P cholesterol import
1293	O_BomoOtmSK11164_complete:A_BomoOtmSK_comp13821_c0_seq2 503bp	Bomo_Chr6	scavenger_receptor_class_B_type_1_like_protein_11_[Bombyx_mori]	GO:0001530 F lipopolysaccharide binding GO:0001618 F virus receptor activity GO:0001786 F phosphatidylserine binding GO:0001875 F lipopolysaccharide immune receptor activity GO:0001935 P endothelial cell proliferation GO:0005215 F transporter activity GO:0005515 F protein binding GO:0005545 F 1-phosphatidylinositol binding GO:0005737 C cytoplasm GO:0005765 C lysosomal membrane GO:0005886 C plasma membrane GO:0005887 C integral component of plasma membrane GO:0005901 C caveola GO:0006702 P androgen biosynthetic process GO:0006707 P cholesterol catabolic process GO:0006869 P lipid transport GO:0006898 P receptor-mediated endocytosis GO:0006910 P phagocytosis, recognition GO:0008035 F high-density lipoprotein particle binding GO:0009986 C cell surface GO:0010595 P positive regulation of endothelial cell migration GO:0010867 P positive regulation of triglyceride biosynthetic process GO:0010886 P positive regulation of cholesterol storage GO:0010899 P regulation of phosphatidylcholine catabolic process GO:0015914 P phospholipid transport GO:0015920 P lipopolysaccharide transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016032 P viral process GO:0030169 F low-density lipoprotein particle binding GO:0030301 P cholesterol transport GO:0030666 C endocytic vesicle membrane GO:0031528 C microvillus membrane GO:0031663 P lipopolysaccharide-mediated signaling pathway GO:0032497 P detection of lipopolysaccharide GO:0033344 P cholesterol efflux GO:0034185 F apolipoprotein binding GO:0034186 F apolipoprotein A-I binding GO:0034375 P high-density lipoprotein particle remodeling GO:0034383 P low-density lipoprotein particle clearance GO:0034384 P high-density lipoprotein particle clearance GO:0035461 P vitamin transmembrane transport GO:0042060 P wound healing GO:0042157 P lipoprotein metabolic process GO:0042632 P cholesterol homeostasis GO:0042803 F protein homodimerization activity GO:0043231 C intracellular membrane-bounded organelle GO:0043534 P blood vessel endothelial cell migration GO:0043654 P recognition of apoptotic cell GO:0043691 P reverse cholesterol transport GO:0044406 P adhesion of symbiont to host GO:0046718 P viral entry into host cell GO:0050764 P regulation of phagocytosis GO:0050892 P intestinal absorption GO:0051000 P positive regulation of nitric-oxide synthase activity GO:0070062 C extracellular exosome GO:0070328 P triglyceride homeostasis GO:0070506 F high-density lipoprotein particle receptor activity GO:0070508 P cholesterol import
1294	O_BomoOtmSK11165_complete:A_BomoOtmSK_comp13821_c0_seq3 291bp	Bomo_Chr6	scavenger_receptor_class_B_type_1_like_protein_11_[Bombyx_mori]	GO:0005886 C plasma membrane GO:0005901 C caveola GO:0006898 P receptor-mediated endocytosis GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016323 C basolateral plasma membrane GO:0016324 C apical plasma membrane GO:0045056 P transcytosis GO:0070506 F high-density lipoprotein particle receptor activity
1295	O_BomoOtmSK11166_internal:A_BomoOtmSK_comp13822_c0_seq1 855bp	Bomo_Chr15	probable_ubiquitin_carboxyl-terminal_hydrolase_FAF-X_isoform_X3_[Bombyx_mori]	GO:0004843 F thiol-dependent deubiquitinase GO:0005515 F protein binding GO:0005737 C cytoplasm GO:0006508 P proteolysis GO:0006511 P ubiquitin-dependent protein catabolic process GO:0006897 P endocytosis GO:0007275 P multicellular organism development GO:0007349 P cellularization GO:0007601 P visual perception GO:0008233 F peptidase activity GO:0008234 F cysteine-type peptidase activity GO:0008354 P germ cell migration GO:0008583 P mystery cell differentiation GO:0009950 P dorsal/ventral axis specification GO:0016579 P protein deubiquitination GO:0016787 F hydrolase activity GO:0030154 P cell differentiation GO:0035192 P nuclear cortical migration GO:0036459 F thiol-dependent deubiquitinase GO:0045824 P negative regulation of innate immune response GO:0045861 P negative regulation of proteolysis GO:0048477 P oogenesis GO:0050829 P defense response to Gram-negative bacterium GO:0050896 P response to stimulus
1296	O_BomoOtmSK11167_5prime_partial:A_BomoOtmSK_comp13822_c0_seq1 106bp	Bomo_Chr15
1297	O_BomoOtmSK11168_complete:A_BomoOtmSK_comp13823_c0_seq1 336bp	Bomo_Chr17	keratin,_type_I_cytoskeletal_10_isoform_X1_[Bombyx_mori]
1298	O_BomoOtmSK11169_complete:A_BomoOtmSK_comp13823_c0_seq1 161bp	Bomo_Chr17
1299	O_BomoOtmSK1116_complete:A_BomoOtmSK_comp4608_c0_seq1 194bp	Bomo_Chr28
1300	O_BomoOtmSK11170_complete:A_BomoOtmSK_comp13823_c0_seq1 115bp	Bomo_Chr17
1301	O_BomoOtmSK11171_complete:A_BomoOtmSK_comp13823_c0_seq2 355bp	Bomo_Chr17	keratin,_type_I_cytoskeletal_10_isoform_X1_[Bombyx_mori]
1302	O_BomoOtmSK11172_complete:A_BomoOtmSK_comp13823_c0_seq2 161bp	Bomo_Chr17
1303	O_BomoOtmSK11173_complete:A_BomoOtmSK_comp13823_c0_seq2 115bp	Bomo_Chr17
1304	O_BomoOtmSK11174_complete:A_BomoOtmSK_comp13823_c0_seq3 356bp	Bomo_Chr17	keratin,_type_I_cytoskeletal_10_isoform_X1_[Bombyx_mori]
1305	O_BomoOtmSK11175_complete:A_BomoOtmSK_comp13823_c0_seq3 181bp	Bomo_Chr17	hypothetical_protein_[Trichomonas_vaginalis_G3]
1306	O_BomoOtmSK11176_complete:A_BomoOtmSK_comp13823_c0_seq3 135bp	Bomo_Chr17
1307	O_BomoOtmSK11177_complete:A_BomoOtmSK_comp13823_c0_seq4 365bp	Bomo_Chr17	keratin,_type_I_cytoskeletal_10_isoform_X1_[Bombyx_mori]
1308	O_BomoOtmSK11178_complete:A_BomoOtmSK_comp13823_c0_seq4 171bp	Bomo_Chr17
1309	O_BomoOtmSK11179_complete:A_BomoOtmSK_comp13823_c0_seq4 125bp	Bomo_Chr17
1310	O_BomoOtmSK1117_complete:A_BomoOtmSK_comp4613_c0_seq1 137bp	Bomo_Chr12	uncharacterized_protein_KIAA1143_homolog_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0008150 P biological_process
1311	O_BomoOtmSK11180_complete:A_BomoOtmSK_comp13823_c0_seq5 346bp	Bomo_Chr17	keratin,_type_I_cytoskeletal_10_isoform_X1_[Bombyx_mori]
1312	O_BomoOtmSK11181_complete:A_BomoOtmSK_comp13823_c0_seq5 171bp	Bomo_Chr17
1313	O_BomoOtmSK11182_complete:A_BomoOtmSK_comp13823_c0_seq5 125bp	Bomo_Chr17
1314	O_BomoOtmSK11183_complete:A_BomoOtmSK_comp13823_c0_seq6 375bp	Bomo_Chr17	keratin,_type_I_cytoskeletal_10_isoform_X1_[Bombyx_mori]
1315	O_BomoOtmSK11184_complete:A_BomoOtmSK_comp13823_c0_seq6 181bp	Bomo_Chr17	hypothetical_protein_[Trichomonas_vaginalis_G3]
1316	O_BomoOtmSK11185_complete:A_BomoOtmSK_comp13823_c0_seq6 135bp	Bomo_Chr17
1317	O_BomoOtmSK11186_3prime_partial:A_BomoOtmSK_comp13824_c0_seq1 278bp	Bomo_Chr20	nuclear_Y/CCAAT-box_binding_factor_C_subunit_NF/YC_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0016602 C CCAAT-binding factor complex GO:0046982 F protein heterodimerization activity
1318	O_BomoOtmSK11187_complete:A_BomoOtmSK_comp13824_c0_seq1 123bp	Bomo_Chr20	hypothetical_protein_GGTG_01387_[Gaeumannomyces_tritici_R3-111a-1]
1319	O_BomoOtmSK11188_complete:A_BomoOtmSK_comp13826_c0_seq1 131bp	Bomo_Chr9
1320	O_BomoOtmSK11189_5prime_partial:A_BomoOtmSK_comp13828_c0_seq1 893bp	Bomo_Chr6	RING_finger_protein_17_[Bombyx_mori]	GO:0005515 F protein binding GO:0005737 C cytoplasm GO:0007275 P multicellular organism development GO:0007281 P germ cell development GO:0007283 P spermatogenesis GO:0030154 P cell differentiation GO:0030529 C ribonucleoprotein complex GO:0031047 P gene silencing by RNA GO:0033391 C chromatoid body GO:0034587 P piRNA metabolic process GO:0043046 P DNA methylation involved in gamete generation GO:0043186 C P granule GO:0046872 F metal ion binding GO:0051321 P meiotic cell cycle GO:0071546 C pi-body