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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1261 O_BomoOtmSK11135_complete:A_BomoOtmSK_comp13801_c0_seq2
434bp
 myoneurin_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
1262 O_BomoOtmSK11136_3prime_partial:A_BomoOtmSK_comp13802_c0_seq1
386bp
 exportin-5_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0031047 P gene silencing by RNA
GO:0035281 P pre-miRNA export from nucleus
GO:0042565 C RNA nuclear export complex
GO:0044822 F RNA binding
GO:0070883 F pre-miRNA binding
GO:0090631 F nucleocytoplasmic carrier activity
GO:1900370 P positive regulation of RNA interference
1263 O_BomoOtmSK11137_3prime_partial:A_BomoOtmSK_comp13802_c0_seq2
386bp
 exportin-5_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0031047 P gene silencing by RNA
GO:0035281 P pre-miRNA export from nucleus
GO:0042565 C RNA nuclear export complex
GO:0044822 F RNA binding
GO:0070883 F pre-miRNA binding
GO:0090631 F nucleocytoplasmic carrier activity
GO:1900370 P positive regulation of RNA interference
1264 O_BomoOtmSK11138_3prime_partial:A_BomoOtmSK_comp13802_c0_seq3
386bp
 exportin-5_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0031047 P gene silencing by RNA
GO:0035281 P pre-miRNA export from nucleus
GO:0042565 C RNA nuclear export complex
GO:0044822 F RNA binding
GO:0070883 F pre-miRNA binding
GO:0090631 F nucleocytoplasmic carrier activity
GO:1900370 P positive regulation of RNA interference
1265 O_BomoOtmSK11139_complete:A_BomoOtmSK_comp13803_c0_seq1
546bp
 apyrase_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005576 C extracellular region
GO:0009166 P nucleotide catabolic process
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0046872 F metal ion binding
1266 O_BomoOtmSK1113_complete:A_BomoOtmSK_comp4603_c0_seq1
341bp
 syntaxin-16_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000149 F SNARE binding
GO:0005484 F SNAP receptor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005829 C cytosol
GO:0005925 C focal adhesion
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006906 P vesicle fusion
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0019905 F syntaxin binding
GO:0031201 C SNARE complex
GO:0031985 C Golgi cisterna
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043231 C intracellular membrane-bounded organelle
GO:0048278 P vesicle docking
GO:0048471 C perinuclear region of cytoplasm
GO:0090161 P Golgi ribbon formation
1267 O_BomoOtmSK11140_complete:A_BomoOtmSK_comp13803_c0_seq1
104bp
1268 O_BomoOtmSK11141_3prime_partial:A_BomoOtmSK_comp13804_c0_seq1
372bp
 DDB1-_and_CUL4-associated_factor_8_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
1269 O_BomoOtmSK11142_internal:A_BomoOtmSK_comp13805_c0_seq1
256bp
 PREDICTED:_uncharacterized_protein_LOC108913684_[Anoplophora_glabripennis]
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
1270 O_BomoOtmSK11143_5prime_partial:A_BomoOtmSK_comp13805_c0_seq1
100bp
 hypothetical_protein_T07_13535_[Trichinella_nelsoni]
1271 O_BomoOtmSK11144_complete:A_BomoOtmSK_comp13805_c0_seq2
226bp
 PREDICTED:_uncharacterized_protein_LOC106720343_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003824 F catalytic activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046718 P viral entry into host cell
GO:0075713 P establishment of integrated proviral latency
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
1272 O_BomoOtmSK11145_5prime_partial:A_BomoOtmSK_comp13805_c0_seq2
169bp
 PREDICTED:_uncharacterized_protein_LOC106720343_[Papilio_machaon]
1273 O_BomoOtmSK11146_3prime_partial:A_BomoOtmSK_comp13807_c1_seq1
380bp
 zinc_finger_protein_311_isoform_X5_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
1274 O_BomoOtmSK11147_complete:A_BomoOtmSK_comp13807_c1_seq1
165bp
1275 O_BomoOtmSK11148_3prime_partial:A_BomoOtmSK_comp13807_c1_seq2
488bp
 zinc_finger_protein_311_isoform_X5_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
1276 O_BomoOtmSK11149_complete:A_BomoOtmSK_comp13807_c1_seq2
165bp
1277 O_BomoOtmSK1114_3prime_partial:A_BomoOtmSK_comp4603_c0_seq2
286bp
 syntaxin-16_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000149 F SNARE binding
GO:0005484 F SNAP receptor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005829 C cytosol
GO:0005925 C focal adhesion
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006906 P vesicle fusion
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0019905 F syntaxin binding
GO:0031201 C SNARE complex
GO:0031985 C Golgi cisterna
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043231 C intracellular membrane-bounded organelle
GO:0048278 P vesicle docking
GO:0048471 C perinuclear region of cytoplasm
GO:0090161 P Golgi ribbon formation
1278 O_BomoOtmSK11150_3prime_partial:A_BomoOtmSK_comp13807_c1_seq3
134bp
 transcriptional_regulator_CRZ2_isoform_X1_[Bombyx_mori]
1279 O_BomoOtmSK11151_3prime_partial:A_BomoOtmSK_comp13808_c0_seq1
1115bp
 5'-3'_exoribonuclease_1_[Bombyx_mori]
GO:0000723 P telomere maintenance
GO:0000932 C P-body
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004534 F 5'-3' exoribonuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006396 P RNA processing
GO:0007126 P meiotic cell cycle
GO:0007569 P cell aging
GO:0016020 C membrane
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0045111 C intermediate filament cytoskeleton
GO:0071028 P nuclear mRNA surveillance
GO:0071044 P histone mRNA catabolic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
1280 O_BomoOtmSK11152_complete:A_BomoOtmSK_comp13808_c0_seq1
101bp
1281 O_BomoOtmSK11153_internal:A_BomoOtmSK_comp13808_c0_seq2
106bp
 5'-3'_exoribonuclease_1_[Bombyx_mori]
GO:0000723 P telomere maintenance
GO:0000932 C P-body
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004534 F 5'-3' exoribonuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006396 P RNA processing
GO:0007126 P meiotic cell cycle
GO:0007569 P cell aging
GO:0016020 C membrane
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0045111 C intermediate filament cytoskeleton
GO:0071028 P nuclear mRNA surveillance
GO:0071044 P histone mRNA catabolic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
1282 O_BomoOtmSK11154_internal:A_BomoOtmSK_comp13809_c0_seq1
290bp
 talin-B_[Bombyx_mori]
1283 O_BomoOtmSK11155_3prime_partial:A_BomoOtmSK_comp13812_c0_seq1
567bp
 scm-like_with_four_MBT_domains_protein_2_isoform_X1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0010629 P negative regulation of gene expression
GO:0016235 C aggresome
GO:0042393 F histone binding
GO:0043231 C intracellular membrane-bounded organelle
1284 O_BomoOtmSK11156_5prime_partial:A_BomoOtmSK_comp13812_c0_seq1
220bp
1285 O_BomoOtmSK11157_complete:A_BomoOtmSK_comp13813_c0_seq1
157bp
 cuticular_protein_hypothetical_4_precursor_[Bombyx_mori]
GO:0005576 C extracellular region
1286 O_BomoOtmSK11158_complete:A_BomoOtmSK_comp13815_c1_seq1
335bp
 probable_serine_hydrolase_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0007275 P multicellular organism development
GO:0007586 P digestion
GO:0008152 P metabolic process
GO:0009636 P response to toxic substance
GO:0016787 F hydrolase activity
GO:0017171 F serine hydrolase activity
GO:0019233 P sensory perception of pain
GO:0052689 F carboxylic ester hydrolase activity
1287 O_BomoOtmSK11159_complete:A_BomoOtmSK_comp13817_c0_seq1
224bp
 putative_Ras-related_protein_Rab-33_[Bombyx_mori]
GO:0000042 P protein localization to Golgi apparatus
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005794 C Golgi apparatus
GO:0005796 C Golgi lumen
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0006913 P nucleocytoplasmic transport
GO:0006914 P autophagy
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0048705 P skeletal system morphogenesis
GO:0070062 C extracellular exosome
GO:1903358 P regulation of Golgi organization
GO:1903434 P negative regulation of constitutive secretory pathway
GO:2000156 P regulation of retrograde vesicle-mediated transport, Golgi to ER
GO:2000785 P regulation of autophagosome assembly
1288 O_BomoOtmSK1115_3prime_partial:A_BomoOtmSK_comp4608_c0_seq1
774bp
 uncharacterized_protein_LOC101736596_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975 P carbohydrate metabolic process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0030246 F carbohydrate binding
GO:0061634 F alpha-D-xyloside xylohydrolase
1289 O_BomoOtmSK11160_complete:A_BomoOtmSK_comp13817_c0_seq2
224bp
 putative_Ras-related_protein_Rab-33_[Bombyx_mori]
GO:0000042 P protein localization to Golgi apparatus
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005794 C Golgi apparatus
GO:0005796 C Golgi lumen
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0006913 P nucleocytoplasmic transport
GO:0006914 P autophagy
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0048705 P skeletal system morphogenesis
GO:0070062 C extracellular exosome
GO:1903358 P regulation of Golgi organization
GO:1903434 P negative regulation of constitutive secretory pathway
GO:2000156 P regulation of retrograde vesicle-mediated transport, Golgi to ER
GO:2000785 P regulation of autophagosome assembly
1290 O_BomoOtmSK11161_complete:A_BomoOtmSK_comp13820_c1_seq1
453bp
 uncharacterized_protein_LOC101743893_isoform_X1_[Bombyx_mori]
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