SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/16228
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8881 O_BomaMG23246_complete:A_BomaMG_comp81921_c0_seq1
258bp
GO:0004316 F 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0030497 P fatty acid elongation
GO:0050661 F NADP binding
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
8882 O_BomaMG23247_complete:A_BomaMG_comp82049_c0_seq1
890bp
GO:0005634 C nucleus
GO:0005737 C cytoplasm
8883 O_BomaMG2324_complete:A_BomaMG_comp13727_c0_seq1
108bp
signal_recognition_particle_14_kDa_protein-like_protein_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005786 C signal recognition particle, endoplasmic reticulum targeting
GO:0006614 P SRP-dependent cotranslational protein targeting to membrane
GO:0008312 F 7S RNA binding
GO:0030529 C ribonucleoprotein complex
GO:0030942 F endoplasmic reticulum signal peptide binding
GO:0042493 P response to xenobiotic stimulus
GO:0044822 F RNA binding
GO:0045047 P protein targeting to ER
GO:0048500 C signal recognition particle
GO:0070062 C extracellular exosome
8884 O_BomaMG23250_5prime_partial:A_BomaMG_comp82054_c0_seq1
618bp
GO:0000387 P spliceosomal snRNP assembly
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016604 C nuclear body
GO:0017069 F snRNA binding
GO:0032797 C SMN complex
GO:0034719 C SMN-Sm protein complex
GO:0044822 F RNA binding
8885 O_BomaMG23252_3prime_partial:A_BomaMG_comp82074_c0_seq1
733bp
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0017056 F structural constituent of nuclear pore
GO:0031965 C nuclear membrane
GO:0034399 C nuclear periphery
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
8886 O_BomaMG23253_internal:A_BomaMG_comp82110_c0_seq1
268bp
8887 O_BomaMG23256_5prime_partial:A_BomaMG_comp82114_c0_seq1
124bp
GO:0005576 C extracellular region
8888 O_BomaMG23257_complete:A_BomaMG_comp82127_c0_seq1
789bp
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007399 P nervous system development
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0019899 F enzyme binding
GO:0030425 C dendrite
GO:0031175 P neuron projection development
GO:0042384 P cilium assembly
GO:0042802 F identical protein binding
GO:0043025 C neuronal cell body
GO:0048471 C perinuclear region of cytoplasm
GO:0070207 P protein homotrimerization
8889 O_BomaMG23259_internal:A_BomaMG_comp82132_c0_seq1
257bp
GO:0000786 C nucleosome
GO:0003677 F DNA binding
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006334 P nucleosome assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0008270 F zinc ion binding
GO:0016407 F acetyltransferase activity
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016747 F acyltransferase activity, transferring groups other than amino-acyl groups
GO:0032403 F protein-containing complex binding
GO:0043966 P histone H3 acetylation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0070776 C MOZ/MORF histone acetyltransferase complex
8890 O_BomaMG2325_5prime_partial:A_BomaMG_comp13728_c0_seq1
123bp
PREDICTED:_LOW_QUALITY_PROTEIN:_CD109_antigen-like,_partial_[Bombyx_mori]
8891 O_BomaMG23261_complete:A_BomaMG_comp82181_c0_seq1
459bp
8892 O_BomaMG23262_5prime_partial:A_BomaMG_comp82181_c0_seq1
159bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
8893 O_BomaMG23264_5prime_partial:A_BomaMG_comp82254_c0_seq1
427bp
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0042327 P positive regulation of phosphorylation
GO:1901215 P negative regulation of neuron death
8894 O_BomaMG23268_5prime_partial:A_BomaMG_comp82262_c0_seq1
168bp
8895 O_BomaMG2326_internal:A_BomaMG_comp13740_c0_seq1
165bp
PREDICTED:_heparan-sulfate_6-O-sulfotransferase_2_[Bombyx_mori]
GO:0008146 F sulfotransferase activity
GO:0015015 P heparan sulfate proteoglycan biosynthetic process, enzymatic modification
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0017095 F heparan sulfate 6-O-sulfotransferase activity
GO:0060173 P limb development
8896 O_BomaMG23270_internal:A_BomaMG_comp82264_c0_seq1
264bp
GO:0005794 C Golgi apparatus
GO:0032092 P positive regulation of protein binding
GO:0034613 P cellular protein localization
GO:0044325 F transmembrane transporter binding
GO:0048471 C perinuclear region of cytoplasm
GO:0072661 P protein localization to plasma membrane
8897 O_BomaMG23273_internal:A_BomaMG_comp82306_c0_seq1
148bp
GO:0000139 C Golgi membrane
GO:0002263 P cell activation involved in immune response
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005547 F phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0005788 C endoplasmic reticulum lumen
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0005801 C cis-Golgi network
GO:0005802 C trans-Golgi network
GO:0005811 C lipid droplet
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006892 P post-Golgi vesicle-mediated transport
GO:0006895 P Golgi to endosome transport
GO:0007030 P Golgi organization
GO:0007346 P regulation of mitotic cell cycle
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0030593 P neutrophil chemotaxis
GO:0031252 C cell leading edge
GO:0032012 P regulation of ARF protein signal transduction
GO:0034067 P protein localization to Golgi apparatus
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043547 P positive regulation of GTPase activity
GO:0048205 P COPI coating of Golgi vesicle
GO:0061162 P establishment of monopolar cell polarity
GO:0070973 P protein localization to endoplasmic reticulum exit site
GO:0080025 F phosphatidylinositol-3,5-bisphosphate binding
GO:0090166 P Golgi disassembly
GO:0097111 P endoplasmic reticulum-Golgi intermediate compartment organization
GO:1903409 P reactive oxygen species biosynthetic process
GO:1903420 P protein localization to endoplasmic reticulum tubular network
GO:2000008 P regulation of protein localization to cell surface
8898 O_BomaMG23276_complete:A_BomaMG_comp82324_c0_seq1
252bp
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
GO:0070847 C core mediator complex
8899 O_BomaMG23277_3prime_partial:A_BomaMG_comp82393_c0_seq1
425bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
8900 O_BomaMG23278_complete:A_BomaMG_comp82438_c0_seq1
265bp
GO:0000045 P autophagosome assembly
GO:0000422 P autophagy of mitochondrion
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005776 C autophagosome
GO:0006501 P C-terminal protein lipidation
GO:0006810 P transport
GO:0006914 P autophagy
GO:0006995 P cellular response to nitrogen starvation
GO:0009267 P cellular response to starvation
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016236 P macroautophagy
GO:0019776 F Atg8 ligase activity
GO:0034045 C phagophore assembly site membrane
GO:0034274 C Atg12-Atg5-Atg16 complex
GO:0035071 P salivary gland cell autophagic cell death
GO:0035096 P larval midgut cell programmed cell death
GO:0044804 P autophagy of nucleus
GO:0048102 P autophagic cell death
GO:0061723 P glycophagy
8901 O_BomaMG23279_3prime_partial:A_BomaMG_comp82489_c0_seq1
1188bp
GO:0000281 P mitotic cytokinesis
GO:0000776 C kinetochore
GO:0001708 P cell fate specification
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005881 C cytoplasmic microtubule
GO:0005886 C plasma membrane
GO:0005912 C adherens junction
GO:0005913 C adherens junction
GO:0005938 C cell cortex
GO:0006461 P protein-containing complex assembly
GO:0006974 P cellular response to DNA damage stimulus
GO:0007026 P negative regulation of microtubule depolymerization
GO:0007050 P regulation of cell cycle
GO:0007163 P establishment or maintenance of cell polarity
GO:0007389 P pattern specification process
GO:0008013 F beta-catenin binding
GO:0008017 F microtubule binding
GO:0008283 P cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016477 P cell migration
GO:0019887 F protein kinase regulator activity
GO:0030027 C lamellipodium
GO:0030054 C cell junction
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0030425 C dendrite
GO:0030426 C growth cone
GO:0030877 C beta-catenin destruction complex
GO:0031016 P pancreas development
GO:0031175 P neuron projection development
GO:0031965 C nuclear membrane
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0032886 P regulation of microtubule-based process
GO:0042493 P response to xenobiotic stimulus
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0043065 P positive regulation of apoptotic process
GO:0043234 C protein-containing complex
GO:0044295 C axonal growth cone
GO:0044306 C neuron projection terminus
GO:0045202 C synapse
GO:0045295 F gamma-catenin binding
GO:0045595 P regulation of cell differentiation
GO:0045732 P positive regulation of protein catabolic process
GO:0045736 P negative regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0051010 F microtubule plus-end binding
GO:0070852 C cell body fiber
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0097305 P response to alcohol
GO:1990090 P cellular response to nerve growth factor stimulus
GO:2000211 P regulation of glutamate metabolic process
8902 O_BomaMG2327_internal:A_BomaMG_comp13747_c0_seq1
165bp
PREDICTED:_probable_ATP-dependent_RNA_helicase_YTHDC2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005783 C endoplasmic reticulum
GO:0006396 P RNA processing
GO:0008186 F ATP-dependent activity, acting on RNA
GO:0016787 F hydrolase activity
GO:0034612 P response to tumor necrosis factor
GO:0044822 F RNA binding
GO:0044829 P positive regulation by host of viral genome replication
GO:0070063 F RNA polymerase binding
GO:0070555 P response to interleukin-1
GO:1990247 F N6-methyladenosine-containing RNA binding
8903 O_BomaMG23282_5prime_partial:A_BomaMG_comp82513_c0_seq1
448bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0008270 F zinc ion binding
GO:0008285 P negative regulation of cell population proliferation
GO:0046872 F metal ion binding
GO:0048286 P lung alveolus development
GO:0072201 P negative regulation of mesenchymal cell proliferation
GO:2000584 P negative regulation of platelet-derived growth factor receptor-alpha signaling pathway
GO:2000791 P negative regulation of mesenchymal cell proliferation involved in lung development
8904 O_BomaMG23283_complete:A_BomaMG_comp82516_c0_seq1
530bp
GO:0000154 P rRNA modification
GO:0001094 F TFIID-class transcription factor complex binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005732 C sno(s)RNA-containing ribonucleoprotein complex
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006608 P obsolete snRNP protein import into nucleus
GO:0015030 C Cajal body
GO:0016020 C membrane
GO:0016049 P cell growth
GO:0016925 P protein sumoylation
GO:0030515 F snoRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0031428 C box C/D RNP complex
GO:0032040 C small-subunit processome
GO:0042254 P ribosome biogenesis
GO:0044822 F RNA binding
GO:0048254 P snoRNA localization
GO:0051117 F ATPase binding
GO:0070761 C pre-snoRNP complex
8905 O_BomaMG23284_3prime_partial:A_BomaMG_comp82585_c0_seq1
441bp
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
8906 O_BomaMG23285_3prime_partial:A_BomaMG_comp82611_c0_seq1
203bp
GO:0001701 P in utero embryonic development
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005737 C cytoplasm
GO:0005845 C mRNA cap binding complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006417 P regulation of translation
GO:0017148 P negative regulation of translation
GO:0031625 F ubiquitin protein ligase binding
GO:0044822 F RNA binding
8907 O_BomaMG23288_internal:A_BomaMG_comp82658_c0_seq1
110bp
GO:0000022 P mitotic spindle elongation
GO:0005516 F calmodulin binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007026 P negative regulation of microtubule depolymerization
GO:0007049 P cell cycle
GO:0008017 F microtubule binding
GO:0030496 C midbody
GO:0030507 F spectrin binding
GO:0031175 P neuron projection development
GO:0051011 F microtubule minus-end binding
GO:0051013 P microtubule severing
8908 O_BomaMG23289_internal:A_BomaMG_comp82693_c0_seq1
253bp
8909 O_BomaMG23291_complete:A_BomaMG_comp82770_c0_seq1
579bp
8910 O_BomaMG23293_complete:A_BomaMG_comp82950_c0_seq1
556bp
GO:0000123 C histone acetyltransferase complex
GO:0002098 P tRNA wobble uridine modification
GO:0002168 P instar larval development
GO:0003824 F catalytic activity
GO:0004402 F histone acetyltransferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007626 P locomotory behavior
GO:0008023 C transcription elongation factor complex
GO:0008080 F N-acetyltransferase activity
GO:0008607 F phosphorylase kinase regulator activity
GO:0016407 F acetyltransferase activity
GO:0016573 P histone acetylation
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0018394 P peptidyl-lysine acetylation
GO:0019233 P sensory perception of pain
GO:0030097 P hemopoiesis
GO:0030431 P sleep
GO:0033588 C elongator holoenzyme complex
GO:0045202 C synapse
GO:0045859 P regulation of protein kinase activity
GO:0046872 F metal ion binding
GO:0048789 P cytoskeletal matrix organization at active zone
GO:0050808 P synapse organization
GO:0051124 P synaptic assembly at neuromuscular junction
GO:0051536 F iron-sulfur cluster binding
GO:2000289 P regulation of photoreceptor cell axon guidance
previous next from show/16228

- SilkBase 1999-2023 -