SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/16228
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8911 O_BomaMG23294_3prime_partial:A_BomaMG_comp83059_c0_seq1
607bp
GO:0000045 P autophagosome assembly
GO:0000407 C phagophore assembly site
GO:0005515 F protein binding
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0016192 P vesicle-mediated transport
GO:0030242 P autophagy of peroxisome
GO:0031410 C cytoplasmic vesicle
GO:0032258 P cytoplasm to vacuole transport by the Cvt pathway
GO:0034497 P protein localization to phagophore assembly site
GO:0044804 P autophagy of nucleus
GO:1990072 C TRAPPIII protein complex
8912 O_BomaMG23295_5prime_partial:A_BomaMG_comp83081_c0_seq1
152bp
GO:0001662 P behavioral fear response
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
8913 O_BomaMG23296_3prime_partial:A_BomaMG_comp83166_c0_seq1
218bp
8914 O_BomaMG23298_internal:A_BomaMG_comp83291_c0_seq1
263bp
8915 O_BomaMG23300_complete:A_BomaMG_comp83396_c0_seq1
298bp
8916 O_BomaMG23302_complete:A_BomaMG_comp83414_c0_seq1
230bp
8917 O_BomaMG23304_3prime_partial:A_BomaMG_comp83543_c0_seq1
186bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0006810 P transport
GO:0007264 P small GTPase mediated signal transduction
GO:0044822 F RNA binding
GO:0051028 P mRNA transport
8918 O_BomaMG23305_internal:A_BomaMG_comp83782_c0_seq1
104bp
8919 O_BomaMG23306_internal:A_BomaMG_comp83790_c0_seq1
326bp
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007275 P multicellular organism development
GO:0016337 P cell-cell adhesion
GO:0016339 P calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
8920 O_BomaMG23307_3prime_partial:A_BomaMG_comp83816_c0_seq1
385bp
GO:0000139 C Golgi membrane
GO:0004622 F lysophospholipase activity
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006629 P lipid metabolic process
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016042 P lipid catabolic process
GO:0016787 F hydrolase activity
GO:0048471 C perinuclear region of cytoplasm
8921 O_BomaMG23308_internal:A_BomaMG_comp83914_c0_seq1
295bp
GO:0004842 F ubiquitin-protein transferase activity
GO:0005516 F calmodulin binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
8922 O_BomaMG23309_3prime_partial:A_BomaMG_comp84033_c0_seq1
482bp
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0003222 P ventricular trabecula myocardium morphogenesis
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006457 P protein folding
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006513 P protein monoubiquitination
GO:0008626 P granzyme-mediated apoptotic signaling pathway
GO:0009411 P response to UV
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019899 F enzyme binding
GO:0031175 P neuron projection development
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0034976 P response to endoplasmic reticulum stress
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0044257 P cellular protein catabolic process
GO:0051082 F unfolded protein binding
GO:0051117 F ATPase binding
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
8923 O_BomaMG2330_3prime_partial:A_BomaMG_comp13751_c0_seq1
174bp
_putative_cuticle_protein_[Bombyx_mori]
GO:0042302 F structural constituent of cuticle
8924 O_BomaMG23310_internal:A_BomaMG_comp84405_c0_seq1
159bp
GO:0000139 C Golgi membrane
GO:0002263 P cell activation involved in immune response
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005547 F phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0005788 C endoplasmic reticulum lumen
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0005801 C cis-Golgi network
GO:0005802 C trans-Golgi network
GO:0005811 C lipid droplet
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006892 P post-Golgi vesicle-mediated transport
GO:0006895 P Golgi to endosome transport
GO:0007030 P Golgi organization
GO:0007346 P regulation of mitotic cell cycle
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0030593 P neutrophil chemotaxis
GO:0031252 C cell leading edge
GO:0032012 P regulation of ARF protein signal transduction
GO:0034067 P protein localization to Golgi apparatus
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043547 P positive regulation of GTPase activity
GO:0048205 P COPI coating of Golgi vesicle
GO:0061162 P establishment of monopolar cell polarity
GO:0070973 P protein localization to endoplasmic reticulum exit site
GO:0080025 F phosphatidylinositol-3,5-bisphosphate binding
GO:0090166 P Golgi disassembly
GO:0097111 P endoplasmic reticulum-Golgi intermediate compartment organization
GO:1903409 P reactive oxygen species biosynthetic process
GO:1903420 P protein localization to endoplasmic reticulum tubular network
GO:2000008 P regulation of protein localization to cell surface
8925 O_BomaMG23314_internal:A_BomaMG_comp84528_c0_seq1
186bp
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001741 C XY body
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006323 P DNA packaging
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007399 P nervous system development
GO:0008286 P insulin receptor signaling pathway
GO:0009887 P animal organ morphogenesis
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0030850 P prostate gland development
GO:0031492 F nucleosomal DNA binding
GO:0032435 P negative regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0043044 P chromatin remodeling
GO:0043234 C protein-containing complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0047485 F protein N-terminus binding
GO:0071564 C npBAF complex
GO:0071565 C nBAF complex
GO:0090544 C SWI/SNF superfamily-type complex
8926 O_BomaMG23316_3prime_partial:A_BomaMG_comp84564_c0_seq1
202bp
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016602 C CCAAT-binding factor complex
GO:0046982 F protein heterodimerization activity
8927 O_BomaMG23318_5prime_partial:A_BomaMG_comp84581_c0_seq1
106bp
8928 O_BomaMG23321_5prime_partial:A_BomaMG_comp84642_c0_seq1
143bp
GO:0004175 F endopeptidase activity
GO:0005575 C cellular_component
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0006508 P proteolysis
GO:0006810 P transport
GO:0016192 P vesicle-mediated transport
8929 O_BomaMG23322_complete:A_BomaMG_comp84646_c0_seq1
624bp
8930 O_BomaMG23323_3prime_partial:A_BomaMG_comp84667_c0_seq1
252bp
GO:0000151 C ubiquitin ligase complex
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007265 P Ras protein signal transduction
GO:0008139 F nuclear localization sequence binding
GO:0008270 F zinc ion binding
GO:0009968 P negative regulation of signal transduction
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031965 C nuclear membrane
GO:0042802 F identical protein binding
GO:0043130 F ubiquitin binding
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
8931 O_BomaMG23325_3prime_partial:A_BomaMG_comp84702_c0_seq1
245bp
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0009790 P embryo development
8932 O_BomaMG23327_internal:A_BomaMG_comp84718_c0_seq1
189bp
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005604 C basement membrane
8933 O_BomaMG23328_internal:A_BomaMG_comp84798_c0_seq1
383bp
8934 O_BomaMG2332_3prime_partial:A_BomaMG_comp13752_c0_seq1
155bp
PREDICTED:_zinc_finger_protein_677-like_isoform_X1_[Bombyx_mori]
8935 O_BomaMG23332_3prime_partial:A_BomaMG_comp84969_c0_seq1
153bp
GO:0007275 P multicellular organism development
8936 O_BomaMG23333_3prime_partial:A_BomaMG_comp85042_c0_seq1
149bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001843 P neural tube closure
GO:0001947 P heart looping
GO:0003281 P ventricular septum development
GO:0003714 F transcription corepressor activity
GO:0004871 F obsolete signal transducer activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005929 C cilium
GO:0007275 P multicellular organism development
GO:0007368 P determination of left/right symmetry
GO:0008013 F beta-catenin binding
GO:0008134 F transcription factor binding
GO:0019901 F protein kinase binding
GO:0021513 P spinal cord dorsal/ventral patterning
GO:0021775 P smoothened signaling pathway involved in ventral spinal cord interneuron specification
GO:0021776 P smoothened signaling pathway involved in spinal cord motor neuron cell fate specification
GO:0035904 P aorta development
GO:0042994 P cytoplasmic sequestering of transcription factor
GO:0043433 P negative regulation of DNA-binding transcription factor activity
GO:0043588 P skin development
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0060976 P coronary vasculature development
GO:0072372 C cilium
GO:1901621 P negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning
GO:2000059 P negative regulation of ubiquitin-dependent protein catabolic process
8937 O_BomaMG23334_5prime_partial:A_BomaMG_comp85060_c0_seq1
120bp
GO:0042302 F structural constituent of cuticle
8938 O_BomaMG23335_3prime_partial:A_BomaMG_comp85199_c0_seq1
307bp
GO:0000166 F nucleotide binding
GO:0000733 P obsolete DNA strand renaturation
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005705 C polytene chromosome interband
GO:0006259 P DNA metabolic process
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0036292 P DNA rewinding
GO:0036310 F ATP-dependent DNA/DNA annealing activity
GO:0071932 P replication fork reversal
GO:1990163 F four-way junction helicase activity
8939 O_BomaMG23336_complete:A_BomaMG_comp85239_c0_seq1
397bp
GO:0004307 F ethanolaminephosphotransferase activity
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006646 P phosphatidylethanolamine biosynthetic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016780 F phosphotransferase activity, for other substituted phosphate groups
GO:0046872 F metal ion binding
GO:1903955 P positive regulation of protein targeting to mitochondrion
8940 O_BomaMG23337_internal:A_BomaMG_comp85240_c0_seq1
303bp
GO:0000139 C Golgi membrane
GO:0003824 F catalytic activity
GO:0004630 F phospholipase D activity
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006629 P lipid metabolic process
GO:0006654 P phosphatidic acid biosynthetic process
GO:0006655 P phosphatidylglycerol biosynthetic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016042 P lipid catabolic process
GO:0016324 C apical plasma membrane
GO:0016787 F hydrolase activity
GO:0030139 C endocytic vesicle
GO:0030334 P regulation of cell migration
GO:0031902 C late endosome membrane
GO:0032534 P regulation of microvillus assembly
GO:0035091 F phosphatidylinositol binding
GO:0048017 P inositol lipid-mediated signaling
GO:0048471 C perinuclear region of cytoplasm
GO:0048870 P cell motility
GO:0050764 P regulation of phagocytosis
GO:0050830 P defense response to Gram-positive bacterium
GO:0070290 F N-acylphosphatidylethanolamine-specific phospholipase D activity
previous next from show/16228

- SilkBase 1999-2023 -