Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
9931	O_BomoMSG1893_3prime_partial:A_BomoMSG_c9338_g1_i1 260bp	Bomo_Chr22	NUAK_family_SNF1-like_kinase_1_isoform_X3_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0002039 F p53 binding GO:0004672 F protein kinase activity GO:0004674 F protein serine/threonine kinase activity GO:0005515 F protein binding GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0006468 P protein phosphorylation GO:0006974 P cellular response to DNA damage stimulus GO:0007155 P cell adhesion GO:0015630 C microtubule cytoskeleton GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity GO:0030155 P regulation of cell adhesion GO:0035507 P regulation of myosin-light-chain-phosphatase activity GO:0035556 P intracellular signal transduction GO:0042127 P regulation of cell population proliferation GO:0046872 F metal ion binding GO:1901796 P regulation of signal transduction by p53 class mediator GO:2000772 P regulation of cellular senescence
9932	O_BomoMSG18940_internal:A_BomoMSG_c26295_g1_i3 577bp	Bomo_Chr3	LOW_QUALITY_PROTEIN:_protein_split_ends_[Bombyx_mori]
9933	O_BomoMSG18941_internal:A_BomoMSG_c26295_g1_i4 130bp	Bomo_Chr3	LOW_QUALITY_PROTEIN:_protein_split_ends_[Bombyx_mori]
9934	O_BomoMSG18942_internal:A_BomoMSG_c26295_g1_i5 654bp	Bomo_Chr3	LOW_QUALITY_PROTEIN:_protein_split_ends_[Bombyx_mori]
9935	O_BomoMSG18943_internal:A_BomoMSG_c26295_g1_i6 390bp	Bomo_Chr3	LOW_QUALITY_PROTEIN:_protein_split_ends_[Bombyx_mori]
9936	O_BomoMSG18944_internal:A_BomoMSG_c26295_g2_i1 172bp	Bomo_Chr3	LOW_QUALITY_PROTEIN:_protein_split_ends_[Bombyx_mori]
9937	O_BomoMSG18945_complete:A_BomoMSG_c26296_g3_i1 599bp	Bomo_Chr20	phosphatidylinositide_phosphatase_SAC1_[Bombyx_mori]	GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0008088 P axo-dendritic transport GO:0012505 C endomembrane system GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016199 P axon midline choice point recognition GO:0016311 P dephosphorylation GO:0016787 F hydrolase activity GO:0016791 F phosphatase activity GO:0030424 C axon GO:0031122 P cytoplasmic microtubule organization GO:0042578 F phosphoric ester hydrolase activity GO:0043025 C neuronal cell body GO:0046329 P negative regulation of JNK cascade GO:0046488 P phosphatidylinositol metabolic process GO:0046664 P dorsal closure, amnioserosa morphology change GO:0052866 F phosphatidylinositol phosphate phosphatase activity GO:0060074 P synapse maturation GO:0060439 P trachea morphogenesis GO:0071683 C sensory dendrite
9938	O_BomoMSG18946_complete:A_BomoMSG_c26296_g3_i1 218bp	Bomo_Chr20
9939	O_BomoMSG18947_3prime_partial:A_BomoMSG_c26297_g1_i1 192bp	Bomo_Chr5	double-stranded_RNA-binding_protein_Staufen_homolog_2_isoform_X2_[Bombyx_mori]
9940	O_BomoMSG18948_complete:A_BomoMSG_c26297_g1_i1 113bp	Bomo_Chr5
9941	O_BomoMSG18949_5prime_partial:A_BomoMSG_c26297_g1_i1 101bp	Bomo_Chr5
9942	O_BomoMSG1894_internal:A_BomoMSG_c9339_g1_i1 125bp	Bomo_Chr23	ribosomal_protein_S6_kinase,_90_kDa_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000287 F magnesium ion binding GO:0001501 P skeletal system development GO:0002224 P toll-like receptor signaling pathway GO:0004672 F protein kinase activity GO:0004674 F protein serine/threonine kinase activity GO:0005515 F protein binding GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0006468 P protein phosphorylation GO:0007049 P cell cycle GO:0007165 P signal transduction GO:0007417 P central nervous system development GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity GO:0019901 F protein kinase binding GO:0030307 P positive regulation of cell growth GO:0032496 P response to lipopolysaccharide GO:0035556 P intracellular signal transduction GO:0043027 F cysteine-type endopeptidase inhibitor activity involved in apoptotic process GO:0043066 P negative regulation of apoptotic process GO:0043154 P negative regulation of cysteine-type endopeptidase activity involved in apoptotic process GO:0043555 P regulation of translation in response to stress GO:0043620 P regulation of DNA-templated transcription in response to stress GO:0045597 P positive regulation of cell differentiation GO:0045944 P positive regulation of transcription by RNA polymerase II GO:0046872 F metal ion binding
9943	O_BomoMSG18950_internal:A_BomoMSG_c26297_g1_i2 177bp	Bomo_Chr5	double-stranded_RNA-binding_protein_Staufen_homolog_2_isoform_X2_[Bombyx_mori]
9944	O_BomoMSG18951_complete:A_BomoMSG_c26297_g1_i2 113bp	Bomo_Chr5
9945	O_BomoMSG18952_5prime_partial:A_BomoMSG_c26297_g1_i2 101bp	Bomo_Chr5
9946	O_BomoMSG18953_internal:A_BomoMSG_c26297_g2_i1 102bp	Bomo_Chr5	double-stranded_RNA-binding_protein_Staufen_homolog_2_isoform_X1_[Bombyx_mori]	GO:0000932 C P-body GO:0003723 F RNA binding GO:0003725 F double-stranded RNA binding GO:0003729 F mRNA binding GO:0003730 F mRNA 3'-UTR binding GO:0005737 C cytoplasm GO:0005875 C microtubule associated complex GO:0005938 C cell cortex GO:0006403 P RNA localization GO:0007017 P microtubule-based process GO:0007275 P multicellular organism development GO:0007315 P pole plasm assembly GO:0007316 P pole plasm RNA localization GO:0007317 P regulation of pole plasm oskar mRNA localization GO:0007318 P pole plasm protein localization GO:0007400 P neuroblast fate determination GO:0007616 P long-term memory GO:0008017 F microtubule binding GO:0008104 P protein localization GO:0008298 P intracellular mRNA localization GO:0008595 P anterior/posterior axis specification, embryo GO:0009925 C basal plasma membrane GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly GO:0016324 C apical plasma membrane GO:0019094 P pole plasm mRNA localization GO:0035418 P protein localization to synapse GO:0045167 P asymmetric protein localization involved in cell fate determination GO:0045177 C apical part of cell GO:0045179 C apical cortex GO:0045180 C basal cortex GO:0045450 P bicoid mRNA localization GO:0045451 P pole plasm oskar mRNA localization GO:0045887 P positive regulation of synaptic assembly at neuromuscular junction GO:0046011 P regulation of oskar mRNA translation GO:0046012 P positive regulation of oskar mRNA translation GO:0048477 P oogenesis GO:0055059 P asymmetric neuroblast division GO:0060293 C germ plasm GO:0071212 C subsynaptic reticulum
9947	O_BomoMSG18954_internal:A_BomoMSG_c26298_g1_i1 721bp	Bomo_Chr18	tRNA_(cytidine(32)-2'-O)-methyltransferase_non-catalytic_subunit_TRM732_[Bombyx_mori]
9948	O_BomoMSG18955_internal:A_BomoMSG_c26298_g1_i2 610bp	Bomo_Chr18	tRNA_(cytidine(32)-2'-O)-methyltransferase_non-catalytic_subunit_TRM732_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005737 C cytoplasm GO:0008033 P tRNA processing GO:0030488 P tRNA methylation
9949	O_BomoMSG18956_3prime_partial:A_BomoMSG_c26298_g1_i3 550bp	Bomo_Chr18	tRNA_(cytidine(32)-2'-O)-methyltransferase_non-catalytic_subunit_TRM732_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005737 C cytoplasm GO:0008033 P tRNA processing GO:0030488 P tRNA methylation
9950	O_BomoMSG18957_internal:A_BomoMSG_c26301_g1_i1 203bp	Bomo_Chr9	tubulin-specific_chaperone_D_[Bombyx_mori]	GO:0000226 P microtubule cytoskeleton organization GO:0005096 F GTPase activator activity GO:0005737 C cytoplasm GO:0005874 C microtubule GO:0005886 C plasma membrane GO:0005912 C adherens junction GO:0005923 C bicellular tight junction GO:0006457 P protein folding GO:0007021 P tubulin complex assembly GO:0007023 P post-chaperonin tubulin folding pathway GO:0010812 P negative regulation of cell-substrate adhesion GO:0016020 C membrane GO:0016328 C lateral plasma membrane GO:0030054 C cell junction GO:0031115 P negative regulation of microtubule polymerization GO:0034333 P adherens junction assembly GO:0043547 P positive regulation of GTPase activity GO:0048487 F beta-tubulin binding GO:0070830 P bicellular tight junction assembly
9951	O_BomoMSG18958_5prime_partial:A_BomoMSG_c26301_g1_i1 105bp	Bomo_Chr9
9952	O_BomoMSG18959_internal:A_BomoMSG_c26301_g1_i2 636bp	Bomo_Chr9	tubulin-specific_chaperone_D_[Bombyx_mori]	GO:0000226 P microtubule cytoskeleton organization GO:0005096 F GTPase activator activity GO:0005737 C cytoplasm GO:0005874 C microtubule GO:0005886 C plasma membrane GO:0005912 C adherens junction GO:0005923 C bicellular tight junction GO:0006457 P protein folding GO:0007021 P tubulin complex assembly GO:0007023 P post-chaperonin tubulin folding pathway GO:0010812 P negative regulation of cell-substrate adhesion GO:0016020 C membrane GO:0016328 C lateral plasma membrane GO:0030054 C cell junction GO:0031115 P negative regulation of microtubule polymerization GO:0034333 P adherens junction assembly GO:0043547 P positive regulation of GTPase activity GO:0048487 F beta-tubulin binding GO:0070830 P bicellular tight junction assembly
9953	O_BomoMSG1895_complete:A_BomoMSG_c9340_g1_i1 309bp	Bomo_Chr24	extradiol_ring-cleavage_dioxygenase_[Bombyx_mori]	GO:0005737 C cytoplasm GO:0006725 P cellular aromatic compound metabolic process GO:0008198 F ferrous iron binding GO:0008270 F zinc ion binding GO:0016491 F oxidoreductase activity GO:0016701 F oxidoreductase activity, acting on single donors with incorporation of molecular oxygen GO:0046566 F DOPA dioxygenase activity GO:0046872 F metal ion binding GO:0050297 F stizolobate synthase activity GO:0051213 F dioxygenase activity GO:0055114 P obsolete oxidation-reduction process
9954	O_BomoMSG18960_complete:A_BomoMSG_c26301_g1_i2 201bp	Bomo_Chr9
9955	O_BomoMSG18961_3prime_partial:A_BomoMSG_c26301_g1_i2 114bp	Bomo_Chr9
9956	O_BomoMSG18962_5prime_partial:A_BomoMSG_c26301_g1_i2 105bp	Bomo_Chr9
9957	O_BomoMSG18963_internal:A_BomoMSG_c26301_g1_i3 268bp	Bomo_Chr9	tubulin-specific_chaperone_D_[Bombyx_mori]	GO:0000226 P microtubule cytoskeleton organization GO:0005096 F GTPase activator activity GO:0005737 C cytoplasm GO:0005874 C microtubule GO:0005886 C plasma membrane GO:0005912 C adherens junction GO:0005923 C bicellular tight junction GO:0006457 P protein folding GO:0007021 P tubulin complex assembly GO:0007023 P post-chaperonin tubulin folding pathway GO:0010812 P negative regulation of cell-substrate adhesion GO:0016020 C membrane GO:0016328 C lateral plasma membrane GO:0030054 C cell junction GO:0031115 P negative regulation of microtubule polymerization GO:0034333 P adherens junction assembly GO:0043547 P positive regulation of GTPase activity GO:0048487 F beta-tubulin binding GO:0070830 P bicellular tight junction assembly
9958	O_BomoMSG18964_5prime_partial:A_BomoMSG_c26301_g1_i3 105bp	Bomo_Chr9
9959	O_BomoMSG18965_3prime_partial:A_BomoMSG_c26301_g1_i3 104bp	Bomo_Chr9
9960	O_BomoMSG18966_3prime_partial:A_BomoMSG_c26302_g1_i1 303bp	Bomo_Chr24	hypothetical_protein_[Escherichia_coli]	GO:0003964 F RNA-directed DNA polymerase activity GO:0006278 P RNA-dependent DNA biosynthetic process GO:0008152 P metabolic process GO:0016740 F transferase activity GO:0016779 F nucleotidyltransferase activity