Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
9901	O_BomoMSG18912_complete:A_BomoMSG_c26284_g2_i2 131bp	Bomo_Chr13	caseinolytic_peptidase_B_protein_homolog_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0005524 F ATP binding GO:0005739 C mitochondrion GO:0008152 P metabolic process GO:0016787 F hydrolase activity GO:0016887 F ATP hydrolysis activity GO:0034605 P cellular response to heat
9902	O_BomoMSG18913_complete:A_BomoMSG_c26284_g2_i2 115bp	Bomo_Chr13
9903	O_BomoMSG18914_internal:A_BomoMSG_c26285_g1_i1 877bp	Bomo_Chr10	nuclear_pore_complex_protein_Nup155_[Bombyx_mori]	GO:0000972 P transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery GO:0005634 C nucleus GO:0005635 C nuclear envelope GO:0005643 C nuclear pore GO:0006406 P mRNA export from nucleus GO:0006606 P protein import into nucleus GO:0006810 P transport GO:0006913 P nucleocytoplasmic transport GO:0006998 P nuclear envelope organization GO:0015031 P protein transport GO:0016020 C membrane GO:0017056 F structural constituent of nuclear pore GO:0031965 C nuclear membrane GO:0036228 P protein localization to nuclear inner membrane GO:0044611 C nuclear pore inner ring GO:0051028 P mRNA transport GO:0086014 P atrial cardiac muscle cell action potential
9904	O_BomoMSG18915_complete:A_BomoMSG_c26285_g1_i1 103bp	Bomo_Chr10
9905	O_BomoMSG18916_internal:A_BomoMSG_c26285_g1_i2 439bp	Bomo_Chr10	nuclear_pore_complex_protein_Nup155_[Bombyx_mori]	GO:0000972 P transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery GO:0005215 F transporter activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005635 C nuclear envelope GO:0005643 C nuclear pore GO:0006405 P RNA export from nucleus GO:0006406 P mRNA export from nucleus GO:0006409 P tRNA export from nucleus GO:0006606 P protein import into nucleus GO:0006810 P transport GO:0006913 P nucleocytoplasmic transport GO:0006998 P nuclear envelope organization GO:0007077 P mitotic nuclear membrane disassembly GO:0010827 P regulation of glucose transmembrane transport GO:0015031 P protein transport GO:0016020 C membrane GO:0016032 P viral process GO:0016925 P protein sumoylation GO:0017056 F structural constituent of nuclear pore GO:0019083 P viral transcription GO:0031047 P gene silencing by RNA GO:0031965 C nuclear membrane GO:0036228 P protein localization to nuclear inner membrane GO:0044611 C nuclear pore inner ring GO:0051028 P mRNA transport GO:0075733 P intracellular transport of virus GO:0086014 P atrial cardiac muscle cell action potential GO:1900034 P regulation of cellular response to heat
9906	O_BomoMSG18917_3prime_partial:A_BomoMSG_c26286_g1_i1 356bp	Bomo_Chr13	aly_protein_[Bombyx_mori]	GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0006351 P transcription, DNA-templated GO:0007049 P cell cycle GO:0017053 C transcription repressor complex GO:0071897 P DNA biosynthetic process
9907	O_BomoMSG18918_internal:A_BomoMSG_c26286_g2_i1 218bp	Bomo_Chr13	aly_protein_[Bombyx_mori]	GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0006351 P transcription, DNA-templated GO:0007049 P cell cycle GO:0017053 C transcription repressor complex GO:0071897 P DNA biosynthetic process
9908	O_BomoMSG18919_5prime_partial:A_BomoMSG_c26287_g1_i1 234bp	Bomo_Chr6	uncharacterized_protein_LOC110384743_[Bombyx_mori]
9909	O_BomoMSG1891_internal:A_BomoMSG_c9331_g1_i1 111bp	Bomo_Chr6
9910	O_BomoMSG18920_5prime_partial:A_BomoMSG_c26287_g1_i2 257bp	Bomo_Chr6	uncharacterized_protein_LOC110384743_[Bombyx_mori]
9911	O_BomoMSG18921_5prime_partial:A_BomoMSG_c26287_g1_i3 436bp	Bomo_Chr6	uncharacterized_protein_LOC110384743_[Bombyx_mori]
9912	O_BomoMSG18922_5prime_partial:A_BomoMSG_c26287_g1_i4 415bp	Bomo_Chr6	uncharacterized_protein_LOC110384743_[Bombyx_mori]
9913	O_BomoMSG18923_5prime_partial:A_BomoMSG_c26287_g2_i4 106bp	Bomo_Chr6	uncharacterized_protein_LOC110385953_[Bombyx_mori]
9914	O_BomoMSG18924_3prime_partial:A_BomoMSG_c26288_g1_i1 361bp	Bomo_Chr20	nucleolar_protein_9_[Bombyx_mori]	GO:0000056 P ribosomal small subunit export from nucleus GO:0000447 P endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0000472 P endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0003723 F RNA binding GO:0005634 C nucleus GO:0005730 C nucleolus GO:0006364 P rRNA processing GO:0030686 C 90S preribosome GO:0030688 C preribosome, small subunit precursor GO:0042254 P ribosome biogenesis
9915	O_BomoMSG18925_5prime_partial:A_BomoMSG_c26291_g1_i2 235bp	Bomo_Chr8	SPRY_domain-containing_SOCS_box_protein_3-like_[Bombyx_mori]	GO:0005622 C intracellular anatomical structure GO:0016567 P protein ubiquitination GO:0035556 P intracellular signal transduction
9916	O_BomoMSG18926_complete:A_BomoMSG_c26291_g1_i4 317bp	Bomo_Chr8	SPRY_domain-containing_SOCS_box_protein_3-like_[Bombyx_mori]	GO:0005622 C intracellular anatomical structure GO:0016567 P protein ubiquitination GO:0035556 P intracellular signal transduction
9917	O_BomoMSG18927_complete:A_BomoMSG_c26291_g1_i5 317bp	Bomo_Chr8	SPRY_domain-containing_SOCS_box_protein_3-like_[Bombyx_mori]	GO:0005622 C intracellular anatomical structure GO:0016567 P protein ubiquitination GO:0035556 P intracellular signal transduction
9918	O_BomoMSG18928_complete:A_BomoMSG_c26292_g1_i1 492bp	Bomo_Chr6	phenylalanyl-tRNA_synthetase_alpha_subunit_[Bombyx_mori]	GO:0000049 F tRNA binding GO:0000166 F nucleotide binding GO:0002161 F aminoacyl-tRNA editing activity GO:0004812 F aminoacyl-tRNA ligase activity GO:0004826 F phenylalanine-tRNA ligase activity GO:0005524 F ATP binding GO:0005737 C cytoplasm GO:0006412 P translation GO:0006418 P tRNA aminoacylation for protein translation GO:0006432 P phenylalanyl-tRNA aminoacylation GO:0006450 P regulation of translational fidelity GO:0009328 C phenylalanine-tRNA ligase complex GO:0016874 F ligase activity GO:0043039 P tRNA aminoacylation
9919	O_BomoMSG18929_5prime_partial:A_BomoMSG_c26292_g1_i1 256bp	Bomo_Chr6
9920	O_BomoMSG1892_internal:A_BomoMSG_c9336_g1_i1 149bp	Bomo_Chr3	uncharacterized_protein_LOC105841303_isoform_X2_[Bombyx_mori]
9921	O_BomoMSG18930_complete:A_BomoMSG_c26292_g1_i1 100bp	Bomo_Chr6
9922	O_BomoMSG18931_complete:A_BomoMSG_c26292_g1_i2 492bp	Bomo_Chr6	phenylalanyl-tRNA_synthetase_alpha_subunit_[Bombyx_mori]	GO:0000049 F tRNA binding GO:0000166 F nucleotide binding GO:0002161 F aminoacyl-tRNA editing activity GO:0004812 F aminoacyl-tRNA ligase activity GO:0004826 F phenylalanine-tRNA ligase activity GO:0005524 F ATP binding GO:0005737 C cytoplasm GO:0006412 P translation GO:0006418 P tRNA aminoacylation for protein translation GO:0006432 P phenylalanyl-tRNA aminoacylation GO:0006450 P regulation of translational fidelity GO:0009328 C phenylalanine-tRNA ligase complex GO:0016874 F ligase activity GO:0043039 P tRNA aminoacylation
9923	O_BomoMSG18932_5prime_partial:A_BomoMSG_c26292_g1_i2 256bp	Bomo_Chr6
9924	O_BomoMSG18933_complete:A_BomoMSG_c26292_g1_i2 100bp	Bomo_Chr6
9925	O_BomoMSG18934_3prime_partial:A_BomoMSG_c26293_g1_i1 531bp	Bomo_Chr21	F-box/LRR-repeat_protein_7_[Bombyx_mori]
9926	O_BomoMSG18935_complete:A_BomoMSG_c26293_g1_i1 135bp	Bomo_Chr21
9927	O_BomoMSG18936_3prime_partial:A_BomoMSG_c26293_g1_i2 535bp	Bomo_Chr21	F-box/LRR-repeat_protein_7_[Bombyx_mori]
9928	O_BomoMSG18937_complete:A_BomoMSG_c26293_g1_i2 135bp	Bomo_Chr21
9929	O_BomoMSG18938_3prime_partial:A_BomoMSG_c26294_g1_i1 307bp	Bomo_Chr3	tRNA-splicing_endonuclease_subunit_Sen2_[Bombyx_mori]	GO:0000213 F tRNA-intron endonuclease activity GO:0000214 C tRNA-intron endonuclease complex GO:0000379 P tRNA-type intron splice site recognition and cleavage GO:0003676 F nucleic acid binding GO:0004518 F nuclease activity GO:0005634 C nucleus GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation GO:0006397 P mRNA processing GO:0008033 P tRNA processing GO:0016829 F lyase activity GO:0090305 P nucleic acid phosphodiester bond hydrolysis GO:0090501 P RNA phosphodiester bond hydrolysis GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
9930	O_BomoMSG18939_internal:A_BomoMSG_c26295_g1_i2 592bp	Bomo_Chr3	LOW_QUALITY_PROTEIN:_protein_split_ends_[Bombyx_mori]